Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F03f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           24   1.1  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   3.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.8  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +3

Query: 411 LGDLLNG--EQAVRRATELGGVECVSG 485
           LGD + G  + A+RR    GGV+ +SG
Sbjct: 23  LGDNIQGITKPAIRRLARRGGVKRISG 49


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -2

Query: 415 PNAIQHFAARMYPLVNVGSNDT 350
           PN I H+   + PL  +   DT
Sbjct: 31  PNVIDHYFRDLQPLFKLACTDT 52


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -3

Query: 327 PSYTCIASCNMQICCRNMLHFLGT 256
           P Y C   CN  I C N +   GT
Sbjct: 470 PIYECNKRCNCDIDCINRVVQRGT 493


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/52 (21%), Positives = 21/52 (40%)
 Frame = -3

Query: 369 MLDPMIQLSVHLQEPSYTCIASCNMQICCRNMLHFLGTV*WLHHTWPMLLCN 214
           ++  +  + + L+ PS  CI   +  I C     +     + H  WP  + N
Sbjct: 121 VMHSVTSVGIDLEMPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPYDILN 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,142
Number of Sequences: 438
Number of extensions: 2338
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)