Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F01f
         (464 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    26   2.5  
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    25   7.5  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    25   7.5  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    24   9.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      24   9.9  

>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -3

Query: 111 LSSKHIIELPA-YSSS*KYFFLLHHYLINVFSLI 13
           L  + + ++PA YS+  K+ FL +   I +FSLI
Sbjct: 22  LGGRLVSKIPAVYSNDNKFVFLTYDTFIGIFSLI 55


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -1

Query: 446 YQ-NKLSXNYRCNNVIXFEA 390
           YQ N+L+  Y CNN+  FE+
Sbjct: 84  YQLNELAELYNCNNIFFFES 103


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 110 KTKRWSIMGVSAWRIACAKIGLGRPRIYD 196
           KTK W    + AW +A   I + R   Y+
Sbjct: 108 KTKHWMASNILAWALAANSISIMRIDSYN 136


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 192 TTRSHHTLIGSAEQFLIQQDDRNLETL 272
           T  S  ++IGS+EQ  +  D+R L+ L
Sbjct: 15  TPLSTASIIGSSEQLYMTHDERYLDVL 41


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 128 LTNASFYHQNTSSNFQHIL 72
           L N SF+H + S NF+ +L
Sbjct: 159 LENRSFFHDSESDNFKVVL 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,478
Number of Sequences: 5004
Number of extensions: 34606
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)