Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335F01f
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409...    29   1.4  
12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110     28   3.2  
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    28   3.2  
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345     27   7.4  

>03_05_0510 +
           25039408-25039455,25040627-25040641,25040832-25040991,
           25041116-25041192,25041324-25042528,25042537-25042621,
           25043068-25043130,25043207-25043263,25043299-25043361,
           25043560-25043643,25043730-25044320,25044535-25044663
          Length = 858

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -3

Query: 216 STCDVTGSYMRGLP-RPIFAQAMRHALTPIIDQRFVLSSKH 97
           ++ DVT S+   L  R  F+ + R    P +D+RFV+SS H
Sbjct: 105 TSLDVTVSFPSLLALRSFFSSSPRSCTGPELDERFVMSSNH 145


>12_02_0980 - 25018107-25018469,25018792-25018938,25019028-25020110
          Length = 530

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 92  MMCFDDKTKRWSIMGVSAWRIACAKIGLGRPRIYDPVTSHV 214
           + CF  +T RWS+  ++ W   CA +  GR R+      H+
Sbjct: 182 VFCFRVETTRWSLEQLNRW---CAALHRGRARVIVVANLHL 219


>03_06_0353 -
           33317015-33318235,33318567-33318824,33319587-33319904,
           33319949-33320011,33320103-33320496,33320684-33320796,
           33320932-33321639,33321667-33323199,33323395-33323607,
           33323718-33324700,33324890-33325423,33325694-33325820,
           33326083-33326162,33327347-33327377,33327949-33328053,
           33328119-33328124,33328349-33328985,33329144-33329478,
           33330394-33331113
          Length = 2792

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 143 H*HPLLTNASFYHQNTSSNFQH 78
           H H  L ++S YHQN + N QH
Sbjct: 84  HHHQQLLHSSAYHQNPTHNLQH 105


>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
          Length = 347

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 338 CQHIKLEIGCETSINLCSLCS 276
           C+H+ L  GCE +++ C +C+
Sbjct: 315 CRHLCLCRGCEAAVDACPVCA 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,908,870
Number of Sequences: 37544
Number of extensions: 207026
Number of successful extensions: 373
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)