Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E12f
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0236 + 6666104-6666202,6666530-6666832,6667476-6667550,666...    29   1.6  
04_04_0439 - 25207950-25209629                                         28   2.9  

>03_02_0236 +
           6666104-6666202,6666530-6666832,6667476-6667550,
           6668329-6668367,6668905-6668923,6669796-6669852,
           6670432-6670559,6670644-6670712,6671116-6671201,
           6671285-6671394,6672060-6672110,6672602-6672660,
           6672953-6672997,6673132-6673206,6673314-6673430
          Length = 443

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 209 KNVYKILARCFIISYSIKNLCHYITIIYMI 298
           ++ YKIL +CF+I +    L +Y+ ++ +I
Sbjct: 104 RSYYKILGKCFLILFVTSVLVYYVWLLLLI 133


>04_04_0439 - 25207950-25209629
          Length = 559

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 9   RINFIFSHTFSNY-ASKTFSY*NNHWHVITIVVNDLLLDIPAMIKRIISTY 158
           ++N  + H +S + AS   +Y +N W ++++V   LLL +  M +    TY
Sbjct: 503 QVNRYYDHKWSTWIASLKHNYFSNPWAIVSVVAGVLLL-LLTMTQTFYGTY 552


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,204,967
Number of Sequences: 37544
Number of extensions: 108081
Number of successful extensions: 171
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)