Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E12f
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical ...    27   4.4  
AF039042-3|AAP40513.1|  359|Caenorhabditis elegans Serpentine re...    27   4.4  
AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine re...    27   4.4  
U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila...    27   5.9  
AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical ...    27   5.9  
AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte ...    27   5.9  
Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical
           protein C53B4.1 protein.
          Length = 517

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 272 HYITIIYMILMYFIKYIYFLISYYC*TDEFSMMIQ 376
           + IT+I+   + F+ ++ F+ S YC  D F   +Q
Sbjct: 30  YQITLIFSAQLIFVIFLDFMPSTYCTDDNFCYKLQ 64


>Z48230-4|CAO78721.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 12  INFIFSHTFSNYASKTFSY*NNHWHVITIVVNDL 113
           I F+F    +N A+  F Y NN+ H+  I  NDL
Sbjct: 284 IRFLFQAIVANPANDGFQYLNNN-HITVITRNDL 316


>Z48230-3|CAA88263.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 12  INFIFSHTFSNYASKTFSY*NNHWHVITIVVNDL 113
           I F+F    +N A+  F Y NN+ H+  I  NDL
Sbjct: 284 IRFLFQAIVANPANDGFQYLNNN-HITVITRNDL 316


>Z48006-7|CAO78729.1|  484|Caenorhabditis elegans Hypothetical
           protein F19C6.4b protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 12  INFIFSHTFSNYASKTFSY*NNHWHVITIVVNDL 113
           I F+F    +N A+  F Y NN+ H+  I  NDL
Sbjct: 284 IRFLFQAIVANPANDGFQYLNNN-HITVITRNDL 316


>Z48006-6|CAA88051.1|  515|Caenorhabditis elegans Hypothetical
           protein F19C6.4a protein.
          Length = 515

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 12  INFIFSHTFSNYASKTFSY*NNHWHVITIVVNDL 113
           I F+F    +N A+  F Y NN+ H+  I  NDL
Sbjct: 284 IRFLFQAIVANPANDGFQYLNNN-HITVITRNDL 316


>AL021447-4|CAB60285.3|  330|Caenorhabditis elegans Hypothetical
           protein F19B2.8 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 236 CFIISYSIKNLCHYITIIYMILMYFIKYIYFLISYYC*TDEFSMM 370
           C +I   +  +  Y+TI + +L+  +    FLI +Y  T+ + ++
Sbjct: 115 CILIYSQVLTILTYLTITFQLLVSLLAISKFLIYFYPSTERYVVL 159


>AF039042-3|AAP40513.1|  359|Caenorhabditis elegans Serpentine
           receptor, class w protein101 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 134 DKAYNINIFS*KYSL--NITLVFVINDKNVYKILARCFIISYSIKNLCHYITIIY 292
           DK++ +N     +S+  NI  V ++  K++       F+I  +I +LC  +T +Y
Sbjct: 23  DKSFFVNFILSVFSIFINIFHVIILTRKSMRATSINVFMIGIAICDLCTTLTTVY 77


>AF024503-3|AAG24098.3|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein6 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 248 SYSIKNLCHYITIIYMILMYFIKYIYFLI 334
           +Y+I + C +I I Y +L+    Y YF++
Sbjct: 87  NYAISSRCTFIAISYALLIIHFVYRYFIL 115


>U58750-6|AAB00646.1| 2049|Caenorhabditis elegans Rod (drosophila
           roughdeal) homologprotein 1 protein.
          Length = 2049

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 12  INFIFSHTFSNYASKTFSY*NNHWHVITI 98
           I+F+  HT S+     F   +++WH IT+
Sbjct: 127 IDFVVCHTTSSVCQLIFGSRSDNWHTITL 155


>AF016665-5|ABP57825.1|  649|Caenorhabditis elegans Hypothetical
           protein C49D10.4 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 33  TFSNYASKTFSY*NNHWHVITIVVNDL 113
           TF N+A   F Y N+   V+TI   DL
Sbjct: 453 TFKNHAKSMFKYSNSFCEVLTIANEDL 479


>AC006679-13|AAL38965.1|  644|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform b protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 75  NHWHVITIVVNDLLLDIPAMIKRIISTYFHKN 170
           N W+V+ IVVND L+ I  + K  I   F+KN
Sbjct: 381 NLWYVM-IVVNDALIIIGTVAKISIEFQFNKN 411


>Z81481-6|CAB63435.1|  344|Caenorhabditis elegans Hypothetical
           protein C38D9.8 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 122 YSRNDKAYNINIFS*KYSLNITLVFVINDKNVYKILARCFIISYSIKN 265
           +S +DK YN++     +S N+ L  ++   N    L R  I +++I+N
Sbjct: 164 WSSSDKIYNVDYLFVGHSGNMALTDLLRFNNRIVFLDRVSISNHTIRN 211


>Z68114-7|CAA92161.1|  317|Caenorhabditis elegans Hypothetical
           protein F17A2.10 protein.
          Length = 317

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -1

Query: 216 TFLSLITNTKVMFKEYFYENMLIL 145
           +F++LIT T+++ ++YF   +L+L
Sbjct: 253 SFVALITKTEILLEQYFVSVVLLL 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,440,552
Number of Sequences: 27780
Number of extensions: 133179
Number of successful extensions: 298
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 298
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)