Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces...    28   0.97 
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    28   0.97 
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   2.2  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   5.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   5.2  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    25   9.0  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   9.0  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    25   9.0  

>SPCC63.02c |aah3||alpha-amylase homolog Aah3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 564

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 395 MNGIASPSRPAEIMPLSQRTPKTTIFPSVKNSGAFNFNLIGLGSIF 258
           M+G   P+    +MP +  T  TT++ S  +      +  G GSIF
Sbjct: 489 MSGFTLPTVNRTVMPSTSATATTTVYTSYYSPSYSARSFTGTGSIF 534


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 413 SGSDQDMNGIASPSRPAEI-MPLSQRTP 333
           SGS  D+  I SP+ PAE   P + RTP
Sbjct: 82  SGSSSDLLNIESPASPAEASSPFTVRTP 109


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -1

Query: 401 QDMNGIASPSRPAEIMPLSQRTPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASN 222
           Q +  ++S  R     P +++ P   +  + KNS A + +L  +     +D  S+SPA +
Sbjct: 443 QKIQEVSSNKRLIPSTPPTKK-PINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKS 501

Query: 221 HHLI 210
           H +I
Sbjct: 502 HAVI 505


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 331 KPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSD 197
           K  Y+P   I GL++ TLS     +LM L+  P   ++ +  G D
Sbjct: 50  KVLYAPRTTIEGLNLPTLSSSYYKWLMDLVNIPD-DVVQNCAGLD 93


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 392 NGIASPSRPAEIMPLSQRTPKTTIFPSVKNSGAFNFNL 279
           NG+AS +  +E  P +  +  ++ F +   S  F+FNL
Sbjct: 634 NGLASSTVASESKPSAPESKPSSGFGNTAGSSPFSFNL 671


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 349 YPNEPQKPRYSPPLRIPGL 293
           YP  P K R++PPL  P +
Sbjct: 68  YPTRPPKCRFTPPLFHPNV 86


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 287 N*KPRNS*RRGISWFLGFVGIAALSPLDARVK 382
           N +  NS   G+ W LGF+G   LS    R+K
Sbjct: 377 NVQKENSSALGMGWRLGFLGTLHLSVFIDRLK 408


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 253 SGKIEPSPIRLKLKAPEFLTEGNIVVFG 336
           SG+I   P  L L  P +  EG+ ++ G
Sbjct: 201 SGRIRRGPAPLNLAIPAYTFEGSKIIIG 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,924
Number of Sequences: 5004
Number of extensions: 40298
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)