Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335E07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0111 + 26552513-26553361 31 0.42
01_01_1108 + 8758486-8758815,8758913-8758960,8761512-8761664,876... 29 3.0
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 28 4.0
08_02_1150 + 24709071-24710774 28 5.2
04_04_1230 + 31929261-31929386,31929497-31929643,31929974-319300... 28 5.2
11_06_0204 + 21191611-21192807 27 6.9
06_01_0255 - 1900508-1900549,1900728-1900817,1900902-1900995,190... 27 6.9
01_05_0623 - 23768426-23768794 27 6.9
11_03_0112 - 10135052-10135168,10135712-10135795,10135879-101359... 27 9.1
04_03_0639 + 18247768-18248196 27 9.1
>01_06_0111 + 26552513-26553361
Length = 282
Score = 31.5 bits (68), Expect = 0.42
Identities = 23/57 (40%), Positives = 27/57 (47%)
Frame = -2
Query: 346 PNEPQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPVVS 176
P P PR P PG STL GL+L LL+ P P TS GS+ G +S
Sbjct: 205 PRWPVAPRAPPDGEHPGCRASTL-GLLLLLCRYLLS-PLPDATTSINGSNDSGRPMS 259
>01_01_1108 +
8758486-8758815,8758913-8758960,8761512-8761664,
8761749-8761847,8761884-8761991,8762078-8762200,
8763030-8763287
Length = 372
Score = 28.7 bits (61), Expect = 3.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 346 PNEPQKPRYSPPLRIPGLSISTLSGLV 266
PN P + PP R+PGLS +G +
Sbjct: 172 PNHPNQQHLEPPERLPGLSDDVGAGFI 198
>06_03_0032 -
15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 326 WFLGFVGIAALSPLDARVKLFHSYPGLIRNLXQFTTSESAQAGVP 460
W L +G A + D K+ H++ L++NL TT +A VP
Sbjct: 865 WQLKRLGYAGAAVYDRLEKVRHNFCSLLKNLFGITTKLTACFSVP 909
>08_02_1150 + 24709071-24710774
Length = 567
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 311 RRGISWFLGFVGIAALSPLDARVKLFHSYPGLIRNL 418
R G+SW G AA LD ++F P + RN+
Sbjct: 191 RNGVSWSTMVGGYAAAGELDVAREMFDRMPAIGRNV 226
>04_04_1230 +
31929261-31929386,31929497-31929643,31929974-31930065,
31930159-31930255,31930533-31930576,31930708-31930796,
31931083-31931174,31931266-31931412,31931539-31931644,
31931736-31931812,31932281-31932352,31932738-31932865,
31932947-31933142,31933206-31933407,31933642-31933691
Length = 554
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 299 GAFNFNLIGLGSIFPDDALSVSPASNHHLIHRIRFLRAC 183
G++NF+L L + D A + PAS+ L+ +R R C
Sbjct: 11 GSYNFHLRSLSAASRDSAAAADPASDPILLESVR--RVC 47
>11_06_0204 + 21191611-21192807
Length = 398
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 198 SDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESPGILNG 314
S +Y G WG+A ++ R++ D V++ PG+ G
Sbjct: 195 SAAIYSSETGAWGDAIALEREHPDPDDAVKVGKPGVQVG 233
>06_01_0255 -
1900508-1900549,1900728-1900817,1900902-1900995,
1901119-1901315,1901838-1901957,1902559-1902654,
1902744-1902869,1903125-1903221,1904476-1904546,
1904629-1904724,1904803-1904955,1904993-1905136
Length = 441
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = -1
Query: 413 SGSDQDMNGIASPSRPAEIMPLSQRTPKTTIFPSVKNS 300
S ++Q A+ ++PA+ P+S+R+ +T + +NS
Sbjct: 324 SSTEQGSTQSAAATKPAQAQPMSRRSRRTPTWAKSRNS 361
>01_05_0623 - 23768426-23768794
Length = 122
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +3
Query: 165 AHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKP 275
A + T + S P + + GWGN S + + RT P
Sbjct: 32 AELGDDTSTKRSSPAWGGELVGWGNMSSPVWERRTSP 68
>11_03_0112 -
10135052-10135168,10135712-10135795,10135879-10135953,
10137801-10137978,10138048-10138212,10138291-10138337,
10140233-10140301,10140531-10140629,10141256-10141375,
10141459-10141581,10149251-10149364,10150725-10150913,
10151058-10151110,10151365-10151470,10151957-10152085
Length = 555
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 498 RCSRWXFDFPGACGTPACADSDVVNWXRFRIRPGYEWNSFTLASSGDNAA 349
RC W + G G + DV + + YE SF A SG N+A
Sbjct: 47 RCVDWIGEGGGLGGMEEYIEEDVGTCSAWNLEANYEVVSFIYAFSGINSA 96
>04_03_0639 + 18247768-18248196
Length = 142
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 334 GVRWDSGIISAGREGEAIPFISWSDPEP 417
GV W SG + GRE + W P P
Sbjct: 26 GVAWRSGAPAVGREATMLARCGWPAPAP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,252,371
Number of Sequences: 37544
Number of extensions: 293339
Number of successful extensions: 843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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