Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335E06f
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 33 0.030
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 28 0.64
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 27 2.0
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 26 2.6
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 3.4
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 25 4.5
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 6.0
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 7.9
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 32.7 bits (71), Expect = 0.030
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -3
Query: 355 RSPCCNSICCSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPAS 200
+ CC+S S C+ CCS TSCC CC + CCSN S
Sbjct: 244 KKSCCSSKKPS-CCSQEKKGCCSTE-KTSCCSQEKKSCCTSEKPSCCSNGKS 293
Score = 28.7 bits (61), Expect = 0.49
Identities = 24/73 (32%), Positives = 26/73 (35%), Gaps = 3/73 (4%)
Frame = -3
Query: 337 SICCSY--SCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCS-NPASGSLHSPCSCCI 167
S CCS S CCS SCC S CC CCS S SCC
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQE-KKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCT 281
Query: 166 CCRLPIWSSTSST 128
+ S+ ST
Sbjct: 282 SEKPSCCSNGKST 294
Score = 28.3 bits (60), Expect = 0.64
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Frame = -3
Query: 352 SPCCNSICCSYS-----CTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLH 188
S CC+ S S C+ CCS++ SCC CC CCS
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQEKKSCCSSK-KPSCCSQEKKGCCSTEKTSCCSQEKKSCCT 281
Query: 187 S-PCSCC 170
S SCC
Sbjct: 282 SEKPSCC 288
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.3 bits (60), Expect = 0.64
Identities = 21/66 (31%), Positives = 26/66 (39%)
Frame = -3
Query: 328 CSYSCTLRCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCICCRLPI 149
C TL T S+ C T+ CP G L C L W +G L + S
Sbjct: 79 CYCGSTLTATEVSSSLC-TTPCPGYGSLMCGGDLYWSVYLTGNGVLQTTVSSSSVSSTTS 137
Query: 148 WSSTSS 131
SS+SS
Sbjct: 138 SSSSSS 143
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 2.0
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 229 LCWCCSNPASGSLHSPCSCCICCRLPI 149
LC C S P+ G H P C LPI
Sbjct: 297 LCACHSIPSRGGFHCPRCKAKVCTLPI 323
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -3
Query: 370 AFRSCRSPCCNSICCSYSCTLRCTFCC---SNRCGTS 269
+F RS C S +C +CTFC +N GTS
Sbjct: 339 SFYGIRSHLCMEATPSLACANKCTFCWRHGTNPVGTS 375
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = -3
Query: 307 RCTFCCSNRCGTSCCPSSGILCCFAILCWCCSNPASGSLHSPCSCCICCR 158
+C C + SC P I C F IL A G+ + C +C R
Sbjct: 205 KCVICLDSPENLSCTPCGHIFCNFCIL------SALGTTAATQKCPVCRR 248
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = +3
Query: 102 TLVQIHTGNVLEVLDHMGSRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLG 263
T + G ++ DH + +Q+ E + + Q+ +M+ + R PL+G
Sbjct: 958 TSTNLWLGTCTDIHDHKMLEEKLQESNIEAQRIVRSKMQYLSNMSHEIRTPLIG 1011
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 25.0 bits (52), Expect = 6.0
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -3
Query: 370 AFRSCRSPCCNSICC 326
A +CR+PCC+ + C
Sbjct: 289 ARNACRTPCCDKLFC 303
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 24.6 bits (51), Expect = 7.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 156 SRQHMQQEQGECREPLAGLEQHQHSMAKQHRMPLLGQQE 272
S QHMQQ+Q + ++ +Q Q +Q + QQ+
Sbjct: 252 SLQHMQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQK 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,621,252
Number of Sequences: 5004
Number of extensions: 31022
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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