Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335E06f
(483 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 0.42
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 25 0.42
AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter... 25 0.56
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 22 3.0
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 22 3.0
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 22 3.0
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 22 4.0
AB086196-1|BAD06465.1| 289|Apis mellifera Period protein. 21 6.9
AB264334-1|BAF44089.1| 30|Apis mellifera ecdysone-induced prot... 21 9.1
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 9.1
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 21 9.1
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 25.0 bits (52), Expect = 0.42
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 146 VQHL*YVPRMDLHQRLFDRLKKNTRPFYKDLKQRLI 39
VQ+ Y+P+ + + LFD PF KD+ + +I
Sbjct: 328 VQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVI 363
Score = 21.0 bits (42), Expect = 6.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 292 SKRCSVGCSYRSSKWSCNRGYGRSE 366
S CS S RSS S +R RSE
Sbjct: 18 SNTCSNSQSQRSSGSSISRNSNRSE 42
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 25.0 bits (52), Expect = 0.42
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 146 VQHL*YVPRMDLHQRLFDRLKKNTRPFYKDLKQRLI 39
VQ+ Y+P+ + + LFD PF KD+ + +I
Sbjct: 34 VQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVI 69
>AY395073-1|AAQ96729.1| 203|Apis mellifera GABA neurotransmitter
transporter-1A protein.
Length = 203
Score = 24.6 bits (51), Expect = 0.56
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 259 WGSKRCRTYWSSKRC 303
WGS C YW++K C
Sbjct: 98 WGS--CNNYWNTKNC 110
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 22.2 bits (45), Expect = 3.0
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -3
Query: 244 CCFAILCWCCSN 209
CC CWCC N
Sbjct: 11 CC----CWCCDN 18
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 22.2 bits (45), Expect = 3.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 244 CCFAILCWCCSNPA 203
CC+ +CW + PA
Sbjct: 488 CCWWKICWTITTPA 501
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 22.2 bits (45), Expect = 3.0
Identities = 6/14 (42%), Positives = 9/14 (64%)
Frame = -3
Query: 244 CCFAILCWCCSNPA 203
CC+ +CW + PA
Sbjct: 541 CCWWKICWTITTPA 554
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 21.8 bits (44), Expect = 4.0
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 307 VGCSYRSSKWSCNRGYGRSERPVLLSKDSMPC 402
+G + SCN+ G S SK S PC
Sbjct: 76 LGICAEGMQCSCNKCIGCSAEKFECSKTSNPC 107
>AB086196-1|BAD06465.1| 289|Apis mellifera Period protein.
Length = 289
Score = 21.0 bits (42), Expect = 6.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 292 SKRCSVGCSYRSSKWSCNRGYGRSE 366
S CS S RSS S +R RSE
Sbjct: 18 SNTCSNSQSQRSSGSSISRNSNRSE 42
>AB264334-1|BAF44089.1| 30|Apis mellifera ecdysone-induced protein
75 protein.
Length = 30
Score = 20.6 bits (41), Expect = 9.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 232 ILCWCCSNPASGSLHSPCSCCIC 164
+LC C + ASG + SC C
Sbjct: 7 VLCRVCGDKASGFHYGVHSCEGC 29
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 20.6 bits (41), Expect = 9.1
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 232 ILCWCCSNPASGSLHSPCSCCIC 164
+LC C + ASG + SC C
Sbjct: 65 VLCRVCGDKASGFHYGVHSCEGC 87
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 20.6 bits (41), Expect = 9.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 235 AILCWCCSNPASGSLHSPCSCCIC 164
AIL S+P G+L P C C
Sbjct: 351 AILAMRLSHPLHGNLLPPGVCYTC 374
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,325
Number of Sequences: 438
Number of extensions: 2217
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -