Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    25   5.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   9.0  

>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 342 NSRLR*PFINVAIKNAKSKSSLKRN 416
           NSRL+ P I  ++ + ++KSS+KRN
Sbjct: 113 NSRLK-PVIKDSLSSKQTKSSMKRN 136


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 30   LCTKTVYEFLVSFIVDESSIIKGGN 104
            LCTK+  +  VS I+D++ +   GN
Sbjct: 1254 LCTKSEIDVPVSEILDDNFVFNAGN 1278


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,029,656
Number of Sequences: 5004
Number of extensions: 38407
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)