Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    27   1.3  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   3.0  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    25   6.8  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.8  
SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   6.8  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    25   9.0  
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    25   9.0  

>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 422 EVE*LAESLDVWRRGLRPVVVM*CV 496
           EVE L  +LDVWRR +   +V  C+
Sbjct: 107 EVEQLCSTLDVWRRRIPHALVAKCI 131


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 130 KSVLAYRHMYARNGKYHYMYLCLSNLFNIFESAL 231
           K VL  +H+  R  K  ++   L NL+ ++ESA+
Sbjct: 263 KRVLQPKHLQGRRLKPMFVQFVLENLWAVYESAV 296


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 219 RISIRGNGLITIPSAYGSYSTSTL 290
           R++ RGN  +  P+ Y  Y+T+ +
Sbjct: 367 RLNFRGNRYVEFPAPYDDYTTNQI 390


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 476 PV*GRGAKRLEIRPIIQPQLD 414
           P  GRG  RL   P++QP +D
Sbjct: 147 PKRGRGRPRLHPLPVVQPSVD 167


>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
           catalytic subunit|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 132 FDVLKSDVSMTLSCQYWS 79
           ++V K  + M+ SC YWS
Sbjct: 583 YEVAKKALEMSASCSYWS 600


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 235 PLMLIRRC*TNWINTNTYSDISHFVHTY 152
           PL+L+    TNWIN +++ D+S  +  +
Sbjct: 291 PLVLLAAF-TNWINLDSFLDLSSVISPF 317


>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 372 NRLGLRWDCVGTASGLRW 319
           NR+  RWD      GLRW
Sbjct: 146 NRMSGRWDSSTCGGGLRW 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,107,701
Number of Sequences: 5004
Number of extensions: 41367
Number of successful extensions: 92
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)