Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0081 + 20745627-20748144,20748211-20748308                       28   4.0  
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516...    28   5.2  
02_04_0175 + 20642877-20643618,20643844-20643955,20644052-206441...    27   9.1  

>09_06_0081 + 20745627-20748144,20748211-20748308
          Length = 871

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 307 PLAVPPQSRRSPDTVPAQ-SQPVSLVRYKP 393
           P+A PP S  SP TVP   S P++L    P
Sbjct: 550 PVATPPDSASSPSTVPRMPSAPLALRALAP 579


>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
            14351740-14351840,14351960-14352032,14352111-14352252,
            14353239-14353399,14354017-14354129,14354226-14354325,
            14354580-14354676,14354798-14354849,14355074-14355175,
            14355256-14355402,14355485-14355656,14355752-14355991,
            14356565-14356621,14356853-14356942,14357089-14357284,
            14358117-14358228,14358305-14358459,14359155-14360580,
            14360663-14360857,14361214-14361684
          Length = 1540

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 307  PLAVPPQSRRSPDTVPAQSQPVSL 378
            P A+PPQ       +PA SQP+ L
Sbjct: 1271 PQALPPQPHGFQPAIPAMSQPIDL 1294


>02_04_0175 +
           20642877-20643618,20643844-20643955,20644052-20644174,
           20644258-20644509,20644510-20644639,20644719-20644928,
           20645280-20645426
          Length = 571

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 331 RRSPDTVPAQSQPVSLVRYKPQKL 402
           RR P+T P Q  PVS     PQK+
Sbjct: 50  RRGPNTSPVQQLPVSAPPKNPQKV 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,824,812
Number of Sequences: 37544
Number of extensions: 268433
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)