Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74029-3|CAE17749.1|  113|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical pr...    28   3.5  
EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha 1,2-fuc...    28   3.5  

>Z74029-3|CAE17749.1|  113|Caenorhabditis elegans Hypothetical
           protein C45B11.5 protein.
          Length = 113

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 290 EQIGVYHLQSHRSPD--AVPTQSQRSPSRFH*LDINRR 397
           E+  VYH ++   PD  +VP  S+R P+ F  +DI  +
Sbjct: 53  EESSVYHFENEFKPDDDSVPINSKRKPAGFCDIDIENK 90


>Z99710-9|CAN99658.1|  402|Caenorhabditis elegans Hypothetical
           protein F08A8.5b protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = -2

Query: 364 GTALGLCRDCVGTAVGLQVVHTYLFNVLVL*LP*ADGIVIRPFPLMLIRRC*TNWINTNT 185
           G A  L R  V  A     + T   N+  L    AD   +R  P  L+    TNW     
Sbjct: 107 GIATSLQRKAVINATNPSFIETLNRNIQPLFPKLADQFTLRIIPDSLVTHQQTNWGRCCV 166

Query: 184 YSDISHFVH 158
           Y D S F++
Sbjct: 167 YDDPSRFLN 175


>Z99710-8|CAB16868.1|  383|Caenorhabditis elegans Hypothetical
           protein F08A8.5a protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = -2

Query: 364 GTALGLCRDCVGTAVGLQVVHTYLFNVLVL*LP*ADGIVIRPFPLMLIRRC*TNWINTNT 185
           G A  L R  V  A     + T   N+  L    AD   +R  P  L+    TNW     
Sbjct: 88  GIATSLQRKAVINATNPSFIETLNRNIQPLFPKLADQFTLRIIPDSLVTHQQTNWGRCCV 147

Query: 184 YSDISHFVH 158
           Y D S F++
Sbjct: 148 YDDPSRFLN 156


>Z68107-1|CAA92132.1|  264|Caenorhabditis elegans Hypothetical
           protein F48C5.1 protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 129 QIGSSLSPYVCTKWEISLYVFVFIQFV*HLRISIRGNGLITIPSAYGSYSTSTLN 293
           ++ S ++P VC  W   + + VFI  +  L   +     +  P  Y  YST+T+N
Sbjct: 176 RVDSVVTPPVCAYWPPVVTLLVFIVIIVLLAYCLY-KFKVRNPHHYSKYSTTTIN 229


>EF015633-1|ABK20307.1|  383|Caenorhabditis elegans alpha
           1,2-fucosyltransferase protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = -2

Query: 364 GTALGLCRDCVGTAVGLQVVHTYLFNVLVL*LP*ADGIVIRPFPLMLIRRC*TNWINTNT 185
           G A  L R  V  A     + T   N+  L    AD   +R  P  L+    TNW     
Sbjct: 88  GIATSLQRKAVINATNPSFIETLNRNIQPLFPKLADQFTLRIIPDSLVTHQQTNWGRCCV 147

Query: 184 YSDISHFVH 158
           Y D S F++
Sbjct: 148 YDDPSRFLN 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,742,759
Number of Sequences: 27780
Number of extensions: 233818
Number of successful extensions: 594
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)