Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   3.3  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   5.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   5.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   5.8  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 103 IEKYSFTLYSSSQNYERLVIGTYD 174
           I++ + T+Y  S N+++L+   YD
Sbjct: 353 IDRSTNTMYVLSDNFQQLLFSKYD 376


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = +1

Query: 103 IEKYSFTLYSSSQNYERLVIGTYDVVRNCGPRKYNILAVPVRYA 234
           I KY +  +++ +N  +L +      R+     YN + + V+++
Sbjct: 661 IFKYGYVSHANQRNMYKLDLKNMKYTRSADLSSYNCVPINVQFS 704


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +1

Query: 340 YPLSTCIFYMDT 375
           YPL+ C++Y  T
Sbjct: 298 YPLTGCLYYFST 309


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 514 NWKNSYCLNYTFIVLNI 464
           N+K  YC NY  +  NI
Sbjct: 95  NYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 514 NWKNSYCLNYTFIVLNI 464
           N+K  YC NY  +  NI
Sbjct: 95  NYKKLYCNNYKKLYYNI 111


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 514 NWKNSYCLNYTFIVLNI 464
           N+K  YC NY  +  NI
Sbjct: 95  NYKKLYCNNYRKLYYNI 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,778
Number of Sequences: 438
Number of extensions: 3885
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)