Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    28   0.73 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   5.2  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   5.2  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   6.8  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   9.0  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    25   9.0  

>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +3

Query: 201 DNVPMFTKQKMNLNPSDLITHAAVSSDNLVVAMANGKLFRMDIRNPDSEQEIHYSKYCQP 380
           DN+P    QK N    DLI     + +NL++  ++     + I   D   E+H SK  + 
Sbjct: 337 DNIPTLLDQKHNW--LDLIASITKNDENLILETSSDYQVALAIDLLDKLLELHPSKRVKA 394

Query: 381 TSKLSGLFLDPLG 419
            + L   F +  G
Sbjct: 395 KTALQHEFFNACG 407


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +3

Query: 243 PSDL-ITHAAVSSDNLVVAMANGKLFRMDIRNP-DSEQEIHYSKYCQPTSKLSGLFLDPL 416
           P D+ +  +A++   +VVA++NG+L   ++ +  +  Q   Y +    T+ ++ L L P+
Sbjct: 564 PQDVYVVQSAINDMQIVVALSNGELVYFEMSDDVEGGQLNEYQERKTLTANVTSLALGPV 623


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 59  RRCSYTNCFFQNDF 100
           R+C   NCFF +DF
Sbjct: 20  RKCQSRNCFFSHDF 33


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 112  SISKQHRLPIEQSHLLSP*YLQDTSICSSKIMY 210
            S SK H     ++  L   YL D SIC  +I+Y
Sbjct: 1221 SFSKWHSKVFSRNLRLLKKYLNDVSICWEQIVY 1253


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
 Frame = +3

Query: 210 PMFTKQKMNLNPSDLITHAAVSSDNLVVAMAN-GKLFRMDIRNPDSEQEIHYSKYCQPTS 386
           P   +  + L P +   H   S+    +   N G+LF + +R+P  + ++    +    S
Sbjct: 161 PQGMESLIKLLPKEKCEHLCCSNPMKFIISTNFGRLFSVQLRDPAGQPDVSVQLFASDIS 220

Query: 387 KLS 395
             S
Sbjct: 221 TFS 223


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 172 DIMGSAGGFVL*EACAACL 116
           D M  AGG VL  AC  C+
Sbjct: 430 DTMRKAGGIVLANACGPCI 448


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 315 FRMDIRNPDSEQEIHYSKYCQPTSKLSGLFLDP 413
           F ++I NP  E ++ Y K       L  L LDP
Sbjct: 516 FLLNIANPAPEGKLFYEKQTGDNPYLKYLLLDP 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,502
Number of Sequences: 5004
Number of extensions: 42339
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)