Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335E01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973...    31   0.56 
03_04_0066 + 17003276-17004067                                         31   0.56 
01_05_0328 + 21035231-21036931                                         28   4.0  
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199...    27   6.9  
04_01_0286 + 3800617-3801720,3801945-3801989,3802063-3802203,380...    27   9.1  

>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
            21997494-21997838,21998323-21999240,21999312-21999640,
            21999709-21999832,21999901-22000071,22000188-22001648,
            22002647-22002910,22003866-22004189
          Length = 1831

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 375  QPTSKLSGLFLDPLGCHLLMSFSSKTKDG 461
            +PTS +S   + P+ CH ++  +SK KDG
Sbjct: 1448 EPTSIISYALVSPMYCHQMLDENSKNKDG 1476


>03_04_0066 + 17003276-17004067
          Length = 263

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 25/82 (30%), Positives = 36/82 (43%)
 Frame = +3

Query: 57  VVGVVIRTVFSKMTSILDQYKQAAQASYRTKPPAEPMISSGYINMQLEDNVPMFTKQKMN 236
           VVGV   T  SK+ + L         S+R KPP      +   N   +DN+P     KM 
Sbjct: 73  VVGVAKTTHRSKLAAFLGSLVSPESTSFRKKPPPAASSETTTYNYNDDDNLP-----KMQ 127

Query: 237 LNPSDLITHAAVSSDNLVVAMA 302
           + PS   T +  +S ++  A A
Sbjct: 128 V-PSSSSTSSGRASIDVAAAAA 148


>01_05_0328 + 21035231-21036931
          Length = 566

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 19/72 (26%), Positives = 38/72 (52%)
 Frame = -2

Query: 238 RFIFCFVNIGTLSSSCILMYPEDIMGSAGGFVL*EACAACLY*SNIEVILEKTVRITTPT 59
           RF F F+++GTL +  +L+Y +D +G +  + +   C+A +  + I V L  T R     
Sbjct: 174 RFFF-FISLGTLLAVTVLVYVQDHVGRSWAYGI---CSAAML-AAIAVFLSGTRRYRYKR 228

Query: 58  TANSNYSSVINI 23
           ++ S    ++ +
Sbjct: 229 SSGSPIVHILQV 240


>04_03_0819 + 20018496-20019487,20019587-20019721,20019834-20019978,
            20020135-20020416,20020649-20020910,20021028-20021224,
            20021315-20021425,20022341-20022392,20022442-20022584,
            20023121-20023210,20023300-20023800,20024108-20024176,
            20024866-20025011,20025475-20025530,20026140-20026286,
            20027405-20027530,20027608-20027876,20028026-20028127
          Length = 1274

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 192  QLEDNVPMFTKQKMNLNPSDLITHAAVSSDNLVVAMANG 308
            +L  +V  FTK   +L  SDL+    VS D++  A+ NG
Sbjct: 1182 KLLSSVENFTKPLSSLPASDLLLAPPVSVDDVAYAVING 1220


>04_01_0286 +
           3800617-3801720,3801945-3801989,3802063-3802203,
           3802368-3802397,3802519-3803025
          Length = 608

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = +3

Query: 141 RTKPPAEPMISSGYINMQLEDNVPMFTK-QKMNLNPSDLITHAAVSSDNLVVAMANGKLF 317
           R KP  +P+     + +  +  + +  K  K  +  S +      S +N VV + NG L 
Sbjct: 60  RDKPITDPIFKQSELRVSRDGILVILNKVAKSMIWSSQIENRPKTSRNNSVVLLDNGNLV 119

Query: 318 RMDIRNPDS 344
             D  NP +
Sbjct: 120 IRDASNPSN 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,993,369
Number of Sequences: 37544
Number of extensions: 245168
Number of successful extensions: 499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)