Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335D12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0359 - 22350435-22351040                                         29   1.7  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    28   4.0  
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711...    28   4.0  
05_01_0212 + 1601861-1603600                                           28   5.2  
04_03_0755 + 19310648-19311603,19312420-19312633                       28   5.2  
09_02_0374 - 8112021-8112820,8112908-8113152,8113256-8113455,811...    27   9.1  
07_01_0307 - 2194796-2199274                                           27   9.1  

>02_04_0359 - 22350435-22351040
          Length = 201

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 378 PRACGAAESCGAVPPHPSLRGVSLTPNVLCTSQKW 274
           PR  G+ E     PP PSL    +TP    T   W
Sbjct: 88  PRFAGSPEPAREAPPPPSLEAEEVTPKSELTESYW 122


>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 334  WWHGATRLSCSACAWPNAWLNVNWKQQQAL 423
            WW G+     S  A+P AW    W++++ +
Sbjct: 995  WWEGSIHSILSVLAYPCAWSWKQWRRRKKI 1024


>01_06_1061 -
           34169469-34169624,34170837-34170938,34171029-34171180,
           34172087-34172153,34172239-34172419,34172655-34172778,
           34174775-34174871,34175929-34176331,34176729-34176888,
           34177412-34177486,34177714-34177892,34178224-34178303,
           34178561-34179322
          Length = 845

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 367 ACAWPNAWLNVNWKQQQALISPSA 438
           ACAWP +W+   W +  A+ +  A
Sbjct: 194 ACAWPFSWITCRWLKGNAVAAEPA 217


>05_01_0212 + 1601861-1603600
          Length = 579

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = -3

Query: 462 GDIRDRMSCARRDQRLLLLPVHVEPRVGPRACGAAESCGAVPPHPSLRGVSLTPNVLCTS 283
           GD+  R + A +  RLLL    V P   P+   +  S    PP P        P++    
Sbjct: 125 GDLLPRATAAEKAIRLLLKSPAVSPSSSPKKSASPPS----PPPPQEAKKEYPPDLTLPD 180

Query: 282 QKWGIFLCSE 253
            K G+F   E
Sbjct: 181 LKSGLFSTDE 190


>04_03_0755 + 19310648-19311603,19312420-19312633
          Length = 389

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 369 CGAAESCGAVPPHPSLRGVSLTP 301
           CG A++ G  PP PS RG+ + P
Sbjct: 106 CGGADAAGVAPP-PSPRGMPMAP 127


>09_02_0374 -
           8112021-8112820,8112908-8113152,8113256-8113455,
           8113584-8114235,8114369-8114661
          Length = 729

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 307 Q*DTAQRWVWWHGATRLSCSACAW 378
           Q DT+Q W  W+  +  S   C+W
Sbjct: 573 QKDTSQMWTVWNPGSEFSLCDCSW 596


>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 422 SACCCFQFTLSHALGHAHAEQLSLVAPCHHTHRC 321
           +ACC       HA+G       SLV  C H + C
Sbjct: 148 AACCGSPHNTIHAIGKRLCFSTSLVDDCDHDYGC 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,872,719
Number of Sequences: 37544
Number of extensions: 200551
Number of successful extensions: 720
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)