Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335D07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 46 3e-06
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 33 0.026
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.034
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 32 0.060
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.32
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 28 0.97
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 27 1.7
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 2.2
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 27 2.2
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 27 2.2
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 3.9
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 26 3.9
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 5.2
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 25 5.2
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.2
SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 6.8
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 6.8
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 6.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.8
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 25 9.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 9.0
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyce... 25 9.0
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 46.4 bits (105), Expect = 3e-06
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 15/180 (8%)
Frame = +3
Query: 3 HLVSRLKKACAHGQMLLQLCEESGRCEARTVLEAGAYASWLRGVLLLELQQWREAADSLQ 182
H + RLK+A G+ L+ + LEA A+A ++ G L E + W + +
Sbjct: 136 HALRRLKRADQFGKELVSFTNAFDCNDHIFYLEAIAFAKYIEGTLNYEKRDWEGSLSAFS 195
Query: 183 RAR---IVLEQLCTALPADERIVYDQKLEELKPSLRYCAYNIG--DESAAGDLMAMRG-- 341
+R +VL+ L E+ V + ++ +LRY A G +++ + D++ +
Sbjct: 196 ISRLSFLVLQNKIDTLAEHEKSVLGELQNQIDSNLRYVAQRTGLQNQTKSLDILMLSSIP 255
Query: 342 ---QGLMH--NLDALMAQAKESRSGIMHE---VEWRGRRVTVKPEKVRLFLIALQDLDKS 497
+ + H ++D+ + Q + +EWR +RV ++ V L L A+ D+ S
Sbjct: 256 KDEEVIQHVNSVDSEILQMTGDEQDSLQTITVIEWRDQRVKIEHPDVVLALYAIHDVKNS 315
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 33.1 bits (72), Expect = 0.026
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -2
Query: 232 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSC 53
SS+ + S SS+ + + S++S +SSS++ S + P +S+ +SH SS S
Sbjct: 167 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSS 226
Query: 52 KS 47
S
Sbjct: 227 SS 228
Score = 28.3 bits (60), Expect = 0.73
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -2
Query: 232 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSC 53
SS+ + S SST S++S +SSS++ S + + +SS+ +S SS S
Sbjct: 137 SSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 196
Query: 52 KS 47
S
Sbjct: 197 SS 198
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 32.7 bits (71), Expect = 0.034
Identities = 21/75 (28%), Positives = 41/75 (54%)
Frame = -2
Query: 232 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSC 53
+S+ K+ S SST+ + + S+++ +SSS+ P S +++ + S+ ++ SS S
Sbjct: 359 TSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKS-----SSSSK 413
Query: 52 KSICPCAHAFFSRDT 8
S P + AF+ T
Sbjct: 414 SSSAPVSSAFYHNST 428
Score = 27.5 bits (58), Expect = 1.3
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = -2
Query: 232 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAP--ASSTVRASHLPLSSQ 59
SS+ + S SSTI + + S++ +SSS + S + +P +SST+ +S SS
Sbjct: 294 SSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSS 353
Query: 58 SCKS 47
S S
Sbjct: 354 SFSS 357
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -2
Query: 232 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSS 62
SS+ +V S SS+ + ++ S +SSS S + +SST+ +S L SS
Sbjct: 183 SSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSS 239
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = -2
Query: 232 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSC 53
SS S SST + + S++S +SSS++ S + + +S T +S + SS S
Sbjct: 238 SSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSS 297
Query: 52 KS 47
S
Sbjct: 298 SS 299
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -2
Query: 232 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQS 56
SS+ + S SST+ + S++S +SS++ S + +P+SS+ ++ S S
Sbjct: 308 SSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSS 366
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.9 bits (69), Expect = 0.060
Identities = 44/151 (29%), Positives = 60/151 (39%), Gaps = 1/151 (0%)
Frame = -2
Query: 511 SALDTDLSRSCRAIRKSRTFSGLTVTRRPRHSTSCIMPERDSLACAISASRLCMSP*PRM 332
SA T S S A S T S L + +ST+ S++ +S+S S
Sbjct: 205 SATATSSSLSSTAASNSATSSSLASSSL--NSTTSATATSSSISSTVSSSTPLTSSNSTT 262
Query: 331 AIRSPAADSSPML*AQ*RRLGXXXXXXXX*TIRSSAGKAVQ-SCSSTILARCNESAASRH 155
A S +A SS AQ T SSA S SST L N + +
Sbjct: 263 AATSASATSSS---AQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTT-- 317
Query: 154 CCNSSSNTPRSQEAYAPASSTVRASHLPLSS 62
S+S+TP S + A +++ S PLSS
Sbjct: 318 ---SASSTPLSSVSSANSTTATSTSSTPLSS 345
Score = 28.3 bits (60), Expect = 0.73
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = -2
Query: 241 TIRSSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSS 62
++ SS+ A S +ST A S+ + SSS S + + ASS++ +S L SS
Sbjct: 84 SLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSS 143
Query: 61 QSCKSI 44
+ S+
Sbjct: 144 ITSSSL 149
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -2
Query: 241 TIRSSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSS 62
++ SS+ + SS+ LA + ++ + SSS T S + + ASS+ +S L SS
Sbjct: 74 SLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLASSS 133
Query: 61 QSCKSI 44
+ S+
Sbjct: 134 ITSSSL 139
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 29.5 bits (63), Expect = 0.32
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = -2
Query: 229 SAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAY-APASSTVRASHLPLSSQSC 53
S+ + S SS++L+ + +A S +SSS++P S ++ +PASS+ S + SSQ
Sbjct: 36 SSSSVIPSSSSSMLSSSSATAIS----SSSSSSPLSSSSFTSPASSSFITSLVSSSSQQS 91
Query: 52 KS 47
S
Sbjct: 92 SS 93
Score = 27.9 bits (59), Expect = 0.97
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -2
Query: 232 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTV----RASHLPLS 65
SS ++ S +S+ + + SAA+ +SSS P S + +SS +S PLS
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLS 67
Query: 64 SQSCKSICPCAHAFFS 17
S S S P + +F +
Sbjct: 68 SSSFTS--PASSSFIT 81
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.9 bits (59), Expect = 0.97
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 369 LMAQAKESRSGIMHEVEWRGRRVTVKPEKVRLFLIALQDLDKSVSKAE 512
L+AQA+E + EVE R R ++ K E+ + I ++ + S S E
Sbjct: 1074 LLAQAQEKLEKLKVEVERRRRLLSEKEERRKELAIKIEQVTNSCSDLE 1121
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 514 VSALDTDLSRSCRAIRKSRTFSGLTVTRRPRHSTS 410
+SA DT+ S ++R S F V+RRP STS
Sbjct: 552 ISAFDTNFSEGVGSVRSSFDFPDRPVSRRP-SSTS 585
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 488 QIL*SNKEKSNLFRFDSDATAPPLHFVHNARTRLFSLCHQRIEVV 354
Q+L ++ + S+LF + A LH + + +L C QRI+ +
Sbjct: 49 QVLGTDGDNSSLFELFTTAMNAQLHEMEQCQKKLEDDCQQRIDSI 93
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 297 CCKHNNEDSASAPLASDRKQS 235
C KH N D+A++P+A+ QS
Sbjct: 166 CSKHRNLDAATSPIAAFSSQS 186
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 9 VSRLKKACAHGQMLLQLCEESGRCEARTVLEAGAYAS 119
+ + AHGQ L E + +C A TV GA +S
Sbjct: 265 IGAFSNSIAHGQPLKDSLEFAAKCSAITVQRKGAASS 301
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 115 AYAPASSTVRASHLPLSSQSCKSI--CPCAHAFFSRD 11
A AP +++R L++ SC+ I CP H FF D
Sbjct: 675 ASAPPDTSLRV--WDLNTGSCRDILKCPLGHIFFQHD 709
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 470 KEKSNLFRFDSDATAPPLHFVHNAR 396
K K N +F S AT PP H AR
Sbjct: 324 KTKRNFPKFQSSATYPPFSAHHQAR 348
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -3
Query: 306 RHRCCKHNNEDSASAPLASDRKQSVRPPARLYRVVRVRSW 187
+ + ++N++ +A P+ASD+ + L R+ RVR+W
Sbjct: 169 KDKAVENNHQRNAEKPVASDK---ITDAKLLARLERVRAW 205
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +1
Query: 124 CGACCCWSCNNG-ARQRTHC 180
CG CWSC NG +++ C
Sbjct: 271 CGHIFCWSCINGWTSKKSEC 290
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 5.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -2
Query: 208 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLS 65
S SS I C A+ + N SS+ PR ++Y P + R + PLS
Sbjct: 19 STSSNISDNC---ASRDYDVNISSDNPRLLDSYRPKGNYGRDRNSPLS 63
>SPAC56F8.07 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 409 TKWSGGAVASLSNRKRFDFSLLLYRIWTNPCPRRRRL 519
T+W GG+++ LS +RF S I P P + L
Sbjct: 47 TEWLGGSLSCLSGLRRFYLSTYEDPILLIPAPWKTAL 83
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 312 RTRHRCCKHNNEDSASAPLASDRKQSVR 229
R RH+ +HN+ + AS P + KQ ++
Sbjct: 276 RRRHKRSRHNSSNLASTPKRNGYKQPLQ 303
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 403 LCTKWSGGAVASLSNRKRFDFSL 471
+ T+WSG A SNR F+ L
Sbjct: 166 ISTQWSGSATLKSSNRSIFNIGL 188
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 237 IVYDQKLEELKPSLRYC 287
+ Y+QK+E KP LR C
Sbjct: 1228 VAYEQKVETTKPFLRNC 1244
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -2
Query: 238 IRSSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQ 59
I SS+ ++ + S+ + S ++SS + S +Y PASST + S Q
Sbjct: 707 ITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSS-SSSSYTPASSTSTTTSSVSSRQ 765
Query: 58 SCKS 47
S S
Sbjct: 766 SSSS 769
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/46 (32%), Positives = 30/46 (65%)
Frame = -2
Query: 232 SSAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASS 95
SS+ K+ S SS+ + + S++S+ +SSS++ S+ + +P+SS
Sbjct: 173 SSSSKSSSSSSSSSKSSSSSSSSSK---SSSSSSSSSKSSASPSSS 215
Score = 24.6 bits (51), Expect = 9.0
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -2
Query: 241 TIRSSAGKAVQSCSSTILA--RCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPL 68
TI +S+ + SST +A +S + SSS+TP S + + +S + +S
Sbjct: 115 TISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSS 174
Query: 67 SSQSCKS 47
SS+S S
Sbjct: 175 SSKSSSS 181
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +2
Query: 164 GSGLIATGQDRTRTTLYSLAGGRTDCLR 247
G+ ++AT +D+ +S+ GG C++
Sbjct: 157 GADVLATDEDKMTPLHWSIVGGNLKCMK 184
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 117 SWLRGVLLLELQQWREAADSLQRARIVLEQLCTAL 221
++ ++ L Q+ EAA + RAR +L+ TAL
Sbjct: 1394 AFFNAIVALHRSQFEEAASYITRARDLLDTELTAL 1428
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -2
Query: 208 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKSI 44
S +S+ A + S+ + +SSS+TP S + SS+ +S S+ S SI
Sbjct: 140 SSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSI 194
>SPAC823.14 |||phosphoric monoester hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +3
Query: 243 YDQKLEELKPSLRYCAYNIGDESAAGD---LMAMRGQGLM 353
Y Q E +P + YC + D SAA + L A +G+ L+
Sbjct: 160 YAQLPESKRPHMVYCGDGVSDLSAAKETEHLFAKKGRDLI 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,339
Number of Sequences: 5004
Number of extensions: 39155
Number of successful extensions: 183
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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