Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335D07f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018... 79 3e-15
08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301... 31 0.42
02_02_0351 + 9257204-9261388 31 0.42
03_04_0066 + 17003276-17004067 31 0.74
01_06_0097 + 26413647-26415101 30 0.98
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 30 1.3
06_01_0602 - 4342333-4342790,4342899-4345623 29 1.7
03_06_0506 + 34402494-34403102 29 1.7
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 29 1.7
02_05_0433 - 28939817-28940146 29 2.3
02_01_0305 + 2041370-2043114,2043764-2044121 29 3.0
01_04_0139 - 16570515-16571141 29 3.0
09_06_0058 - 20579518-20580174 28 4.0
07_03_0866 - 22134215-22135351 28 4.0
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 28 5.2
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059... 28 5.2
02_04_0287 + 21600047-21600478 28 5.2
07_01_0330 + 2319014-2319532 27 6.9
02_04_0017 + 18937774-18937864,18938505-18940945 27 6.9
06_03_0901 - 25800317-25800403,25800420-25800674,25800817-258010... 27 9.1
05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866 27 9.1
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 27 9.1
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 27 9.1
>08_02_0195 -
14098865-14099083,14100209-14100352,14101820-14101833,
14101919-14102006,14102303-14102426,14102959-14103068,
14103142-14103348,14103441-14103568,14103781-14103892,
14105678-14105695,14105917-14106109,14106274-14106359,
14106494-14106582,14106817-14106863,14107424-14107534,
14110252-14110318,14110419-14110509
Length = 615
Score = 78.6 bits (185), Expect = 3e-15
Identities = 50/182 (27%), Positives = 96/182 (52%), Gaps = 13/182 (7%)
Frame = +3
Query: 9 VSRLKKACAHGQMLLQLCEESGRCEARTVLEAGAYASWLRGVLLLELQQWREAA-DSLQR 185
+ R +KA + LC G ++RT LEA AYAS+++G LL E ++ EAA + +
Sbjct: 105 ICRFRKAVKWATLFSHLCSLKG--DSRTSLEAEAYASYMKGTLLFEQEKNIEAAMTNFKN 162
Query: 186 ARIVLEQLCTALPADERIVYDQKLEELKPSLRYCAYNIGDES-AAGDLMAMRGQGLMHNL 362
R V E+L + +++ Q++EE++P + +C+ +G + A +L+ + +G ++L
Sbjct: 163 TRAVYEELGKYGSIENQLLCRQRIEEVEPMIGFCSRKLGGSALQAHELLDLEKEGPAYDL 222
Query: 363 -----------DALMAQAKESRSGIMHEVEWRGRRVTVKPEKVRLFLIALQDLDKSVSKA 509
A++++ + ++ M E W GRR + K R+ ++ Q L+K ++ A
Sbjct: 223 FKAKIEVRGQMGAVLSETRSQQAASMTEFSWLGRRFPITNAKTRVSILKAQQLEKDLNGA 282
Query: 510 ET 515
T
Sbjct: 283 NT 284
>08_02_1512 +
27627740-27629009,27629111-27629256,27629842-27630101,
27630346-27630412,27630511-27630545,27630818-27631587,
27631633-27631793
Length = 902
Score = 31.5 bits (68), Expect = 0.42
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = +3
Query: 63 EESGRCEARTVLEAGAYASWLRGVLLLELQQWREAADSLQRARIVLEQLCTALPADE-RI 239
EE + E +E G +S L+ +L W + + ++L+QLC + ++ R+
Sbjct: 437 EEFLQFEEDKAMECGNLSSTLQ-----KLYMWEKKLLEEVKCWVILKQLCLSQTEEKMRV 491
Query: 240 VYDQKLEELK 269
+Y+QK EELK
Sbjct: 492 LYNQKREELK 501
>02_02_0351 + 9257204-9261388
Length = 1394
Score = 31.5 bits (68), Expect = 0.42
Identities = 17/69 (24%), Positives = 37/69 (53%)
Frame = +3
Query: 201 EQLCTALPADERIVYDQKLEELKPSLRYCAYNIGDESAAGDLMAMRGQGLMHNLDALMAQ 380
++LC+ +P ++ Y Q+LEE R + + S GDL + G+ + NL+ + +
Sbjct: 719 KELCSNIPGIGKMKYLQRLEEYHVKKRDIGFEL---SELGDLTDLEGELKIFNLEKVATR 775
Query: 381 AKESRSGIM 407
+ +++ +M
Sbjct: 776 EEANKAKLM 784
>03_04_0066 + 17003276-17004067
Length = 263
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 64 RKAAGAKRVRC*R--RARTLLGCGACCCW 144
R+ G + VRC R R ++ CGACC W
Sbjct: 172 RRLQGVRVVRCGRCDEERWVVRCGACCAW 200
>01_06_0097 + 26413647-26415101
Length = 484
Score = 30.3 bits (65), Expect = 0.98
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 243 KQSVRPPARLYRVVRVRSWPVAMSP 169
+QS PPARL V R WPVA +P
Sbjct: 70 RQSRPPPARLKIAVFSRKWPVASAP 94
>01_06_0124 - 26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/112 (21%), Positives = 46/112 (41%)
Frame = +3
Query: 183 RARIVLEQLCTALPADERIVYDQKLEELKPSLRYCAYNIGDESAAGDLMAMRGQGLMHNL 362
R +I + L D +Q+LEE++ SL + +E A L + NL
Sbjct: 992 REKISILDLSNEEMKDNNYRLNQQLEEIRTSLHAEIAALHEEKDAAQLELQQSLASARNL 1051
Query: 363 DALMAQAKESRSGIMHEVEWRGRRVTVKPEKVRLFLIALQDLDKSVSKAETA 518
+ ++ + E+ S + H + + E+ + I LQ+ K + + A
Sbjct: 1052 ETVLEKQTENLSTLQHANDNLKKNNCTLTEQFEVIKIELQEEVKMAHEEKDA 1103
>06_01_0602 - 4342333-4342790,4342899-4345623
Length = 1060
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 401 ARTRLFSLCHQRIEVVHESLTAHGHKVSGGGLV 303
AR + +CH+ + ++ E L HGH SGG +V
Sbjct: 997 ARPTMVEVCHE-MALLKEDLAKHGHGGSGGDVV 1028
>03_06_0506 + 34402494-34403102
Length = 202
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 365 IEVVHESLTAHGHKVSGGGLVTDVVSTITKTRLQLL*LLIVNNPFV 228
+E +L AHG V + TD+VS + K L+ +++VN P+V
Sbjct: 37 VETTQATLEAHG--VHADVIATDIVSGLEKRLHGLVDVVVVNPPYV 80
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -2
Query: 214 VQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKSIC 41
+ + SST A C+ S ++ P +EA APA+ R PL + ++C
Sbjct: 35 LSTASSTSSASCSPSPLRTLAATDAATPPPEEEAAAPAAEAKRERLQPLQWPARDALC 92
>02_05_0433 - 28939817-28940146
Length = 109
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 150 QQWREAADSLQRARIVLEQLCTALPADERIVYDQKLE 260
QQWR++ +L+R R++LEQ R+ + + E
Sbjct: 54 QQWRQSMQALERERLMLEQAWMEREEQRRVREEARAE 90
>02_01_0305 + 2041370-2043114,2043764-2044121
Length = 700
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = -2
Query: 229 SAGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCK 50
+A A + ++ A +AA+RH +SS++ A AP+S+ A+ SS S
Sbjct: 13 AAAAARHAAAAPSSAATLAAAAARHAAAASSSSAARHAAAAPSSAATLATAAAPSSSSAA 72
Query: 49 SICPCA 32
++ A
Sbjct: 73 TLAAAA 78
>01_04_0139 - 16570515-16571141
Length = 208
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +2
Query: 83 SAYGARGGRVRFLAAGRVAAGVATMARGSGLIATGQDR 196
SA GGR R+ G AAGV ARG G G+ R
Sbjct: 78 SAGDGDGGRRRWQRDGEAAAGVEAAARGDGDGVRGRRR 115
>09_06_0058 - 20579518-20580174
Length = 218
Score = 28.3 bits (60), Expect = 4.0
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = -3
Query: 288 HNNEDSAS------APLASDRKQSVRPPARLYRVVRVRSWPVAMSPL 166
HN D AS AS R + V PPA L V + R VAMSPL
Sbjct: 86 HNPSDRASLLYDGLVAYASYRGEPVMPPAPLPPVAQDRGADVAMSPL 132
>07_03_0866 - 22134215-22135351
Length = 378
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Frame = +3
Query: 312 AAGDLMAMRGQGLMHNLDALMA-QAKESRSGIMHEVE-WRG-RRVTVKPEKVRLFLIALQ 482
A G A+R Q +LDAL++ + + ++ E++ ++G ++KP ++RLFL A
Sbjct: 103 AGGPSPALRYQLPQDDLDALISITSDDDVDNLIEEIDRFQGLAAASIKPPRLRLFLFASS 162
Query: 483 DLDKSVSKA 509
D + + A
Sbjct: 163 PADHASAAA 171
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 27 ACAHGQMLLQLCEESGRCEARTVLEAGAYASWL-RGVLLLELQQWREAADSLQRAR 191
ACA + L+LCE++ R + EA A A L L E Q +A +L+ AR
Sbjct: 706 ACAEEESALRLCEDTLTERERALEEAEAAAQKLAESASLREAAQEEQARRNLEGAR 761
>03_05_1024 +
29802831-29804208,29804710-29804759,29805569-29805954,
29807753-29807813,29807921-29807941
Length = 631
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +2
Query: 413 SGVAGPSRHCQTGKGSTFPYCSTGSGQIRVQGGDGS 520
+GV S++ + + +CS G GQI+ GG GS
Sbjct: 371 AGVLRNSKYTRAAQELLEEFCSVGRGQIKGGGGRGS 406
>02_04_0287 + 21600047-21600478
Length = 143
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 145 SSSNTPRSQEAYAPASSTVRASHLPLSSQSCK 50
++ T E Y P SS ASH P S++ C+
Sbjct: 51 AAETTMCGTERYPPRSSPTPASHAPASARRCR 82
>07_01_0330 + 2319014-2319532
Length = 172
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 282 YCAYNIGDESAAGDLM-AMRGQGLMHNLDALMAQAKES 392
YC + GD +AAGD M A + + DA + QA E+
Sbjct: 69 YCNMHAGDAAAAGDTMKASSTEEELKKFDAELVQALEN 106
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 397 ERDSLACAISASRLCMSP*PRMAIRSPAADSSPML 293
E++S AC I A + +SP R+A++ A P L
Sbjct: 470 EKESDACPIRAMKFSVSPVVRVAVQCKVASDLPKL 504
>06_03_0901 -
25800317-25800403,25800420-25800674,25800817-25801043,
25801773-25801929,25802977-25803159
Length = 302
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 87 ALRTCRFPHKAAKASAHVHMLSSV 16
A R+CR PH+ + AH+H LSS+
Sbjct: 33 AKRSCRSPHR--RREAHLHHLSSL 54
>05_03_0378 - 13278428-13279310,13279411-13279500,13279787-13279866
Length = 350
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 433 RRPRHSTSCIMPERDSLACAISASRLCMS 347
R P+H SC PE S A S +C+S
Sbjct: 263 REPKHWHSCSNPEISSYAVLGGGSHICLS 291
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -2
Query: 214 VQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKSICPC 35
V+S S T + + N + ASR+ + + R + +P+SS S + + + ++
Sbjct: 366 VRSTSRTDVNKANPARASRNNIPTGGKSNRVSPSISPSSSVDSLSSVVSGASTASTVGKM 425
Query: 34 AHAFFSRDTR 5
+H S TR
Sbjct: 426 SHTSESFSTR 435
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 129 GVLLLELQQWREAADSLQRARIVLEQLCTALPADERIVY 245
G+ ++L + EAA + AR VLEQ C A D VY
Sbjct: 472 GLACVQLFKIDEAAQLFEEARAVLEQECGASHPDTLGVY 510
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,356,289
Number of Sequences: 37544
Number of extensions: 367330
Number of successful extensions: 1491
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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