Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335D04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0076 + 25381814-25381880,25382927-25382967,25383398-253835...    34   0.080
01_06_0735 - 31579201-31579208,31579402-31579467,31580222-315803...    28   5.2  
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849     27   9.1  
02_01_0226 + 1476529-1476585,1477207-1477297,1478247-1478362,147...    27   9.1  

>05_06_0076 +
           25381814-25381880,25382927-25382967,25383398-25383502,
           25383612-25383695,25384069-25384103,25384562-25384647,
           25385529-25385594,25385936-25385970
          Length = 172

 Score = 33.9 bits (74), Expect = 0.080
 Identities = 25/88 (28%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
 Frame = +3

Query: 102 MPRGKFTNHKGRNRKFTSPEELEEQRKHDEQK--KKWRKEQXXXXXXXXXXXXXXXXXXX 275
           M RGKF       R F+S E++         K  KK + E+                   
Sbjct: 1   MARGKFKGKPTGERSFSSEEQIAAGTSAGRPKNFKKKQSEKEVYDRRQESDEEYDRSQES 60

Query: 276 XXXXXXXXHPTKAKGVSGLIEVENPNRV 359
                      K KG  GLIE+ENPN V
Sbjct: 61  DEEESDNFQKNKHKGTEGLIEIENPNLV 88


>01_06_0735 -
           31579201-31579208,31579402-31579467,31580222-31580307,
           31580396-31580430,31580586-31580669,31580754-31580843,
           31581267-31581304,31582042-31582108
          Length = 157

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 309 KAKGVSGLIEVENPNRV 359
           K KG  GLI++ENPN V
Sbjct: 66  KHKGTEGLIQIENPNLV 82


>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
          Length = 489

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 69  CSNQITK*NHKMPRGKFTNHKGRNRKFTSPEELEEQRKHDEQKKKWRK 212
           C N +T  +H   RGK   H G N+ +TS   +   +K ++    W +
Sbjct: 343 CDNNVTMADHL--RGK--KHSGLNKVWTSINAVRMNKKKEQSAATWEE 386


>02_01_0226 +
           1476529-1476585,1477207-1477297,1478247-1478362,
           1478834-1478893,1479000-1479065,1479847-1480047
          Length = 196

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 142 RLRPLWLVNLPRGIL*FYLVI*FEQTKNIEVLKRFKIVIKYKMM 11
           +LRPLW + L       Y+V   ++ + I+  + F+ +IK  +M
Sbjct: 73  KLRPLWKMYLSNSDALIYVVDSLDRERIIDARQEFQTIIKDPLM 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,244,694
Number of Sequences: 37544
Number of extensions: 104363
Number of successful extensions: 321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)