Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335D03f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    29   0.56 
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    27   1.7  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    25   6.8  
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom...    25   9.0  
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 298 VCQVLTQGTLFFSAEALD*IY 236
           +CQ+L QG +F    A+D IY
Sbjct: 261 ICQILVQGPIFLKTHAIDCIY 281


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 249 LTESTNFIINLSCLEILI*RLFVNE 175
           L + TN ++NL CL++L    F++E
Sbjct: 15  LWKKTNSLVNLKCLQVLFHEAFLSE 39


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 406 GGPRGRNFIQMKWKELTGLLNSDSSGDPKSEDK 308
           GG   + F++++ K  +  LN+     PK ED+
Sbjct: 149 GGSSSQEFVKLEEKHYSPSLNAMEQTSPKEEDE 181


>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 419

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +3

Query: 372 FICIKLRPRGPPDG 413
           FI  K RP GPPDG
Sbjct: 51  FIKEKFRPYGPPDG 64


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 328 DPKSEDKWRKVCQVLTQGTL 269
           DP  ED +RK C++  +G L
Sbjct: 38  DPTIEDSYRKKCEIDGEGAL 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,469
Number of Sequences: 5004
Number of extensions: 32579
Number of successful extensions: 84
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)