Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335D03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    33   0.094
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    33   0.094
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    32   0.29 
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    32   0.29 
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    32   0.29 
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    32   0.29 
Z81045-1|CAB02816.1|  356|Caenorhabditis elegans Hypothetical pr...    27   6.2  
L16621-10|AAA28227.1|  507|Caenorhabditis elegans Temporarily as...    27   8.1  
L16621-9|AAL11487.1|  568|Caenorhabditis elegans Temporarily ass...    27   8.1  

>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 514 SNLLEKFY*LKC-FSQYYLCNVPYNLYSRNGDLSKPSGGPRGRN 386
           +NLLEK   +   F Q  + N  +N+YS NGDLS+PS     +N
Sbjct: 734 NNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPKKN 777


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 514 SNLLEKFY*LKC-FSQYYLCNVPYNLYSRNGDLSKPSGGPRGRN 386
           +NLLEK   +   F Q  + N  +N+YS NGDLS+PS     +N
Sbjct: 792 NNLLEKSRSMTGKFLQTAVRNKQFNMYSENGDLSRPSDSAPKKN 835


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 478 FSQYYLCNVPYNLYSRNGDLSKPSGGPRGRN 386
           F Q  + N  +N+YS NGDLS+PS     +N
Sbjct: 781 FLQTAVRNKQFNMYSENGDLSRPSDSAPKKN 811


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 478 FSQYYLCNVPYNLYSRNGDLSKPSGGPRGRN 386
           F Q  + N  +N+YS NGDLS+PS     +N
Sbjct: 839 FLQTAVRNKQFNMYSENGDLSRPSDSAPKKN 869


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 478 FSQYYLCNVPYNLYSRNGDLSKPSGGPRGRN 386
           F Q  + N  +N+YS NGDLS+PS     +N
Sbjct: 892 FLQTAVRNKQFNMYSENGDLSRPSDSAPKKN 922


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 478 FSQYYLCNVPYNLYSRNGDLSKPSGGPRGRN 386
           F Q  + N  +N+YS NGDLS+PS     +N
Sbjct: 811 FLQTAVRNKQFNMYSENGDLSRPSDSAPKKN 841


>Z81045-1|CAB02816.1|  356|Caenorhabditis elegans Hypothetical
           protein C36F7.1 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 412 PSGGPRGRNFIQMKWKELTGLLNSDSSGDPKSEDKWRKVCQV 287
           PSGG  G + +    KEL   + +D S  PK + K   +  V
Sbjct: 231 PSGGSGGSDELTTPKKELVSPIPNDDSESPKRKPKMWSIADV 272


>L16621-10|AAA28227.1|  507|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 282, isoform a protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 96  TSAPFIID*PRTKGHADNWSAGSYWHGDK 10
           TS P   +   + G+ D WS G Y H DK
Sbjct: 423 TSLPSASNIVFSNGYLDPWSGGGYDHSDK 451


>L16621-9|AAL11487.1|  568|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 282, isoform b protein.
          Length = 568

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 96  TSAPFIID*PRTKGHADNWSAGSYWHGDK 10
           TS P   +   + G+ D WS G Y H DK
Sbjct: 484 TSLPSASNIVFSNGYLDPWSGGGYDHSDK 512


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,126,830
Number of Sequences: 27780
Number of extensions: 180650
Number of successful extensions: 512
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)