Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335D02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.10
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 29 0.42
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 28 0.73
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo... 27 1.7
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 26 3.9
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.9
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 5.2
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 6.8
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.0
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 9.0
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 25 9.0
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.1 bits (67), Expect = 0.10
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +3
Query: 126 PDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQG--SSGYTAPDGTPIQITYIADANG 299
PD + G G+E + G A+ +G S GYT+P + + Y +
Sbjct: 1500 PDAAAFSPLVQGGSEGRE--GFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPS 1557
Query: 300 YQPSGAHLPTTPAPVP-IPDYIARAIEYIRTHP 395
Y PS T+PA +P P Y + Y T P
Sbjct: 1558 YSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 29.1 bits (62), Expect = 0.42
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Frame = -3
Query: 426 LKYVGRPLAWV-GEF*CTRWPGRCNLGLGQGLG*-WADGHPKA----GIRW---RQQCK* 274
L Y RP W G F + P C +G G+ + H KA GI +
Sbjct: 141 LDYYDRPFGWPKGGFPGPQGPFYCGVGTGRVFARDIVEAHYKACLYAGINISGINAEVMP 200
Query: 273 SEWEYHQGQCSRLNLG-RRWM 214
S+WEY G C+ + +G + WM
Sbjct: 201 SQWEYQVGPCAGIEMGDQLWM 221
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 0.73
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 352 QITSPGPSSTSELTHPSQRSANVFKLYD 435
Q+T+ S TS +THP Q S +V +D
Sbjct: 152 QLTTENSSDTSSMTHPVQPSPSVLGSFD 179
>SPAC1039.07c |||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/84 (23%), Positives = 32/84 (38%)
Frame = +3
Query: 96 QIVSQDADVFPDKYQYQYQTSNGISGQEQGALVNEGREDASIAVQGSSGYTAPDGTPIQI 275
Q+ ++ +D+ PD S G E + + + V SS + G +
Sbjct: 96 QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYTNKYECVAFSSSWHGVTGGAASL 155
Query: 276 TYIADANGYQPSGAHLPTTPAPVP 347
T+ A GY P+ T P P P
Sbjct: 156 TFAAARRGYGPALPGSYTIPEPNP 179
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 186 ALVNEGREDASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAP 341
AL+ G S VQ + YT+ G P T +A A + +G ++ +P
Sbjct: 43 ALLPTGLLMGSPFVQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTSP 94
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 316 PICPLPQPLSQSQITSPGPSSTSELTHPSQRSANV 420
P P P P S I S P S L P+Q +A V
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPV 181
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 464 CFNNSRPYQLSYNLNTLADLWLGWV 390
CF+ P Q NL + A+LW W+
Sbjct: 372 CFDGYLPAQERSNLKSKAELWNEWM 396
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 25.0 bits (52), Expect = 6.8
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 2/87 (2%)
Frame = +1
Query: 157 ATESVARNKERS*TRAVRMHPSPSKVQAATLPLMVLPFRXXXXXXXXXXXXRV--PICPL 330
++E A KE V+ HPSP+ V TLP PF P C
Sbjct: 213 SSEMCASGKECKAADCVKGHPSPATV--TTLP----PFMSMSTIPIPCKYKPCLNPACRF 266
Query: 331 PQPLSQSQITSPGPSSTSELTHPSQRS 411
P +T PS T E T S+RS
Sbjct: 267 IHPTKSRNMTWRPPSKTEE-TSLSERS 292
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +3
Query: 210 DASIAVQGSSGYTAPDGTPIQITYIADANGYQPSGAHLPTTPAPVPIPDYIARAIEYIRT 389
D + S G+ P P + + + Y+P ++L + PAP P P Y +
Sbjct: 826 DEMASPSSSIGHPLPSPPPADFNSL-NVDFYEPH-SYLES-PAPEPQPSYEEESFNATVI 882
Query: 390 HPPKP 404
H P P
Sbjct: 883 HAPTP 887
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 343 SQSQITSPGPSSTSELTHPSQRSANVFK 426
S+ +I++ P+S + LT PS RSA++ K
Sbjct: 1203 SKKRISNGSPTSWNLLTKPSPRSASLPK 1230
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = +1
Query: 337 PLSQSQITSPGPSS--TSELTHPSQRSAN 417
PLS S TSP SS TS ++ SQ+S++
Sbjct: 65 PLSSSSFTSPASSSFITSLVSSSSQQSSS 93
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 218 GCILTALVYERSLFLATDSVAGLILVLVF-VRENVSILRHNLGISFASAHDVRNVSDGYR 42
G I +YE L D +G++L +VF ++++ S+ + + +S + V + +R
Sbjct: 54 GYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFR 113
Query: 41 DQSE 30
+ E
Sbjct: 114 SEVE 117
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -2
Query: 163 PLLV*Y-WYWYLSGKTSASCD 104
PL+ Y WYW L + + SCD
Sbjct: 214 PLMQQYEWYWRLEPEVTFSCD 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,306,436
Number of Sequences: 5004
Number of extensions: 53226
Number of successful extensions: 178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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