Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335C08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 89 5e-19
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 51 9e-08
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 50 2e-07
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 43 2e-05
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 33 0.026
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 30 0.18
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.24
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 29 0.56
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 28 0.97
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 27 1.7
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 2.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 2.2
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 27 2.2
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 27 2.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 3.0
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch... 25 5.2
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 5.2
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 5.2
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 5.2
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 6.8
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.8
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.8
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 25 6.8
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.8
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 6.8
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar... 25 9.0
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 88.6 bits (210), Expect = 5e-19
Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 1/154 (0%)
Frame = +3
Query: 63 DIKSVLIVDGVGAKCAELLNAYGIATT-TKAKISKEELLMEIPNHDALVVRSATQVTKEV 239
DIK +L+++ V L G K +S+++L+ +I A+ +RS T++T+ V
Sbjct: 55 DIK-ILLLENVNQSALSNLKDEGYQVEFLKTSMSEDDLVEKIKGVHAIGIRSKTRLTRRV 113
Query: 240 LDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTGTLMLVLARHVVP 419
L+A L V+G G + +D+D A ++G+ V N+P AN+ S EL ++ LAR V
Sbjct: 114 LEAADSLIVIGCFCIGTNQVDLDFAAERGIAVFNSPYANSRSVAELVIGYIISLARQVGD 173
Query: 420 ASTALKAGRWXRALYTGSELAGKTLAILGLGRVG 521
S L G W + E+ GKTL I+G G +G
Sbjct: 174 RSLELHRGEWNKVSSGCWEIRGKTLGIIGYGHIG 207
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 51.2 bits (117), Expect = 9e-08
Identities = 29/89 (32%), Positives = 43/89 (48%)
Frame = +3
Query: 255 KLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTGTLMLVLARHVVPASTAL 434
KL V G AG +N+DVD A + GV V N P + L + R A +L
Sbjct: 85 KLFVTG--AAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSL 142
Query: 435 KAGRWXRALYTGSELAGKTLAILGLGRVG 521
+ G+W + L + GK + I+G+G +G
Sbjct: 143 RLGKWRQNLSLTDDPYGKRVGIIGMGAIG 171
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 50.0 bits (114), Expect = 2e-07
Identities = 26/87 (29%), Positives = 45/87 (51%)
Frame = +3
Query: 261 KVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTGTLMLVLARHVVPASTALKA 440
K++ AG +N+D+ +A G+ V+ P + + E T L+L L R + A ++
Sbjct: 70 KLIALRCAGFNNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVRE 129
Query: 441 GRWXRALYTGSELAGKTLAILGLGRVG 521
+ G +L GKT+ +LG GR+G
Sbjct: 130 DDFNLNGLLGHDLHGKTIGLLGTGRIG 156
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 43.2 bits (97), Expect = 2e-05
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = +3
Query: 231 KEVLD-AGVKLKVVGRAGAGVDNIDVDSAGKKGVGVINAPGANALSACELTGTLMLVLAR 407
KE++D +K + GAG + +DV + +G+ V + P A + ++ LML R
Sbjct: 71 KEIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALR 130
Query: 408 HVVPASTALKAGRWXRALYTGSELAGKTLAILGLGRVG 521
L W + GKTL ILGLG +G
Sbjct: 131 GFNQGIFELHKNNWNANCKPSHDPEGKTLGILGLGGIG 168
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.1 bits (72), Expect = 0.026
Identities = 37/121 (30%), Positives = 53/121 (43%)
Frame = -2
Query: 415 TTWRARTNINVPVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNT 236
T+ T+ ++P + + S P ITPT +P STS S P P PT+ S T ++
Sbjct: 111 TSTSCTTSTSIPPTGGSSSLSTP---ITPT--VPPTSTSSTSIPIP--PTSTSSTDTNSN 163
Query: 235 SLVT*VAERTTRASWLGISIRSSSLEXXXXXXXXXXXXLRSSAHLAPTPSTIKTDLMSTT 56
L T TT S + + SSSL +S + PT ST TD S+
Sbjct: 164 PLPTTSTSCTTSTS-IPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT-STSSTDTNSSP 221
Query: 55 I 53
+
Sbjct: 222 L 222
Score = 31.5 bits (68), Expect = 0.079
Identities = 37/121 (30%), Positives = 53/121 (43%)
Frame = -2
Query: 415 TTWRARTNINVPVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNT 236
T+ T+ ++P + + S P ITPT +P STS S P P PT+ S T +++
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTP---ITPT--VPPTSTSSTSIPIP--PTSTSSTDTNSS 220
Query: 235 SLVT*VAERTTRASWLGISIRSSSLEXXXXXXXXXXXXLRSSAHLAPTPSTIKTDLMSTT 56
L T TT S + SSSL +S + PT ST TD S+
Sbjct: 221 PLPTTSTSCTTSTSI--PTGGSSSLSTPITPTVPPTSTSSTSIPIPPT-STSSTDTNSSP 277
Query: 55 I 53
+
Sbjct: 278 L 278
Score = 29.9 bits (64), Expect = 0.24
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -2
Query: 346 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 194
G TP TP +P STS STP P P + S T S++ L++ TT S
Sbjct: 349 GNSTTPVTPTVPPTSTSSTSTPPP--PASTSSTGTSSSPLLSTSTSCTTSTS 398
Score = 28.7 bits (61), Expect = 0.56
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -2
Query: 346 GALITP-TPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 194
G TP TP +P STS STP P P + S T S++ L + TT S
Sbjct: 295 GNSTTPVTPTVPPTSTSSTSTPPP--PASTSSTGTSSSPLPSTSTSCTTSTS 344
Score = 26.2 bits (55), Expect = 3.0
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = -2
Query: 397 TNINVPVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*V 218
T N S+ L P +T TP T+ S P + P T S S+++ VT
Sbjct: 528 TTTNCTTSTSVLYTSTP---VTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 584
Query: 217 AERTTRAS 194
TT +
Sbjct: 585 PVTTTNCT 592
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -2
Query: 337 ITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRAS 194
+T TP T+ S P + P T S S+++ VT TT +
Sbjct: 486 VTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCT 533
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/95 (24%), Positives = 36/95 (37%)
Frame = -2
Query: 334 TPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSSSLEX 155
T TP + T STP + P T + S + L T +T + + S+S+
Sbjct: 505 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCT-TSTSVPY 563
Query: 154 XXXXXXXXXXXLRSSAHLAPTPSTIKTDLMSTTIL 50
+ SS + TP T ST++L
Sbjct: 564 TSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 598
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 30.3 bits (65), Expect = 0.18
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = -2
Query: 481 ASSLPVYRARXHLPAFSAVEAGTTWRARTNINVPVSS-HALSALAPGALITPTPFLPAES 305
+SSLP + P+ S++ T+ + +V SS H + P L P+ F+ A+
Sbjct: 116 SSSLPSIPSSSSTPSISSIPHTTSSVSNDIPSVLGSSDHPIDLDNPEHLTPPSSFITAKQ 175
Query: 304 TSMLSTPAPARPTTFSFTPASNTS 233
S L TP P P + S P S
Sbjct: 176 LSRLPTPLP--PPSSSSLPTGTIS 197
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.9 bits (64), Expect = 0.24
Identities = 19/67 (28%), Positives = 39/67 (58%)
Frame = -2
Query: 439 AFSAVEAGTTWRARTNINVPVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTF 260
A S+V ++ + + P+SS + SA +P + ++ + + +E +S L + + A P+T
Sbjct: 464 ASSSVSVPSSSSVQPQSSTPISSSS-SASSPQSTLSTSSEVVSEVSSTLLSGSSAIPSTS 522
Query: 259 SFTPASN 239
S TP+S+
Sbjct: 523 SSTPSSS 529
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 28.7 bits (61), Expect = 0.56
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 415 TTWRARTNINVPVSSHALSALAPGALITPTPFLPAESTSMLSTP 284
T +R ++N+P S +A S A ++ +PA STS S P
Sbjct: 524 TPYRGLHDVNLPASGNASSVSAIPPQVSAQTTIPAASTSATSGP 567
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.9 bits (59), Expect = 0.97
Identities = 24/85 (28%), Positives = 40/85 (47%)
Frame = -2
Query: 310 ESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTRASWLGISIRSSSLEXXXXXXXXX 131
ES+S+ +T +P +TF T +S +S+ T + ++ S +S+ SSS
Sbjct: 238 ESSSLTNTVSPTE-STFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTS--------S 288
Query: 130 XXXLRSSAHLAPTPSTIKTDLMSTT 56
+ S + TPSTI T + T
Sbjct: 289 SGSSQDSTTIDSTPSTIATSTLQPT 313
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 316 PAESTSMLSTPAPARPTTFSFTPASNTS 233
P+ ++ +PAP T S +PA+NTS
Sbjct: 125 PSSISNSSESPAPINSATASMSPANNTS 152
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -2
Query: 367 ALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAERTTR 200
++SAL+ + + PT + S S PAP P + S +P ++ V +R
Sbjct: 229 SVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVKTTTSNASR 284
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +3
Query: 162 KEELLMEIPNHDALVVRSATQVTKEVLDAGVKLKVVGRAGAGVDNIDVDSAGKKGVGVIN 341
KEE +I + +TQ+ + +K + + A +D+I DS G G +N
Sbjct: 660 KEEAQKQISQSLIADQQLSTQIGSVGMGKKQAVKELRKLQAKIDSIIADSMSPMGTGAVN 719
Query: 342 AP 347
+P
Sbjct: 720 SP 721
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 119 QRLRNRHHYQGQDLQGRTSYGDTQPRRSG 205
QR ++G+ +GR +YG T P R G
Sbjct: 86 QRENRGSRFRGRGQRGRGNYGHTAPNRRG 114
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 26.6 bits (56), Expect = 2.2
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Frame = -1
Query: 518 DPAKAKDGEGLASELAASVQSPVPP-ASLQRSGSWDHVASQNQHQRASQLARAQRI---G 351
DP+K+KDG L S V P PP + + +H + + R +L R Q G
Sbjct: 293 DPSKSKDGLNLGS--LTDVVPPQPPQPEHELAALQEHNEAHDAAMRQYELERQQNAMLPG 350
Query: 350 ARSVDHSDAL 321
S+D AL
Sbjct: 351 LASIDGLQAL 360
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 3.0
Identities = 21/74 (28%), Positives = 35/74 (47%)
Frame = -2
Query: 388 NVPVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLVT*VAER 209
++P+ + A L P A I P + L APA P + PA+ + + + ++
Sbjct: 438 SLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASIAELPQQ 497
Query: 208 TTRASWLGISIRSS 167
RA+ L SIR+S
Sbjct: 498 DGRAN-LMASIRAS 510
>SPCC1259.06 |||transcription factor TFIID complex subunit 8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 379 VSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTT 263
+ S A+S P ++ P PA T M + P RPT+
Sbjct: 117 LGSLAVSQNRPAYVVNHLPPFPASHTYMATPVYPVRPTS 155
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 5.2
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = -1
Query: 485 ASELAASVQSPVPPA-SLQRSGSWDHVASQNQHQRASQLA 369
A + + +S +PP+ SL R+G V++QN RA+ LA
Sbjct: 191 AKKASVKSKSVLPPSKSLARTGLPAEVSTQNNANRAALLA 230
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 520 PTLPRPRMARVLPASSLPVYRARXHLPAFSAVE 422
P PR PA+ +PV +R H P S ++
Sbjct: 91 PQKSPPRQKHTAPATPIPVSASRHHKPHHSGLK 123
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 337 ITPTPFLPAESTSMLSTPAPARPTTFSFTPASNTSLV 227
+TPTP A T+ + A +T S T + TS+V
Sbjct: 34 VTPTPLPSANVTTTSFSSASTETSTHSVTSTNITSIV 70
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 367 ALSALAPGALITPTPFLPAESTSMLSTPA 281
+LS + P + +P+P A STS+ S PA
Sbjct: 32 SLSEINPSSFQSPSPSPFASSTSLASKPA 60
>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 867
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -2
Query: 466 VYRARXHLPAFSAVEAGTTWRARTNINVPVSSHALSALAPGA 341
+ R R HL + A E T WR + + LS L P A
Sbjct: 334 IRRLRGHLREYVAWERNTIWREMMAMERRTQAARLSGLKPVA 375
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = -2
Query: 439 AFSAVEAGTTWRARTNINVPVSSHALSALAPGALITPTPFLPAESTSMLSTPAPARPTTF 260
++ V+ T + +V ++ LS + P +L + S+S +ST ++P+T
Sbjct: 16 SYLVVDGATPRTFAPSASVSINYGTLSTVFP-SLYRRASTSSSSSSSSISTSHDSQPSTS 74
Query: 259 SFTPASNTS 233
S +P+S ++
Sbjct: 75 SSSPSSTST 83
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 270 GRAGAGVDNIDVDSAGKKGVGVINAPG 350
G+A +N V+S GKKG ++N G
Sbjct: 1344 GKAERFSENAGVESIGKKGKNLLNESG 1370
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = -2
Query: 340 LITPTPFLPAESTSMLSTPAPAR------PTTFSFTPASNTSLVT*VAERTTRAS 194
LI PTP + S + + P+PA P+ S P+ ++SL + VA + + S
Sbjct: 292 LIAPTPTISPPSANTVGNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNS 346
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 372 ELTGTLMLVLARHVVPASTALKAGRWXRALYTGSELAGKT 491
E G +++L +V P + K RW + Y G EL KT
Sbjct: 908 EADGNAVILLRDNVSPQLSDRKKLRWYKKFYLG-ELINKT 946
>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 988
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = -2
Query: 379 VSSHALSALAPGALI---TPTPFLPAESTSMLSTPAPARPTTFS-FTPASNTSL 230
+S L+A P + +P P P + S+ TP+ + PT S P S+ SL
Sbjct: 584 ISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAPPSSASL 637
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,024
Number of Sequences: 5004
Number of extensions: 36869
Number of successful extensions: 165
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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