Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335C07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ... 179 2e-46
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 31 0.10
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.42
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 3.9
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 3.9
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 25 5.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.8
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 25 6.8
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 6.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 6.8
>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 179 bits (436), Expect = 2e-46
Identities = 90/145 (62%), Positives = 106/145 (73%)
Frame = +1
Query: 82 KLSIDALNLTGKRVLMRVDFNVPLKEGVITNNQRIVAALDSVKYALDKGAKSVVLMSHLG 261
KL+I ++L GK VL+RVDFNVPL ITNN RIV AL ++KYAL++ K+V+LMSHLG
Sbjct: 6 KLAITDVDLKGKNVLIRVDFNVPLDGDRITNNARIVGALPTIKYALEQQPKAVILMSHLG 65
Query: 262 RPDGQVNLKYTLKPVAEELKKLLNKDVTFLTDCIGPEVETACADPSAGSIILLENLRFHI 441
RP+G KY+LKPVA EL KLL K V FL DC+GPEVE AC + G +ILLENLRFHI
Sbjct: 66 RPNGARVAKYSLKPVAAELSKLLGKPVKFLDDCVGPEVEKACKEAKGGEVILLENLRFHI 125
Query: 442 EEEGKGVDASGAKVKADPEKVKAFR 516
EEEG G KVKAD V+AFR
Sbjct: 126 EEEG-SAKVDGKKVKADASAVEAFR 149
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 31.1 bits (67), Expect = 0.10
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +1
Query: 154 KEGVITNNQRIVAALDSVKYALDKGAKSVVLMSHLGRPDGQVNLKYTLKPVAEELKKLLN 333
K V +AAL+ ++ KG K+VV++ G P G + LKP + + L
Sbjct: 443 KARVFDAENDFIAALERGEFK--KGEKTVVIIRFEG-PKGGPGMPEMLKPSSAIMGAGLG 499
Query: 334 KDVTFLTD 357
KDV LTD
Sbjct: 500 KDVALLTD 507
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 29.1 bits (62), Expect = 0.42
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = -1
Query: 449 SSSMWKRRFSSRIIEPAEGSAHAVSTSGPMQSVKNVTSLFSNFFSSSATGLRVYLRFTWP 270
SSS SS I + S+ STS + S + +S FS+ SSS+ + F+
Sbjct: 278 SSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSS--MSSSSSFSSS 335
Query: 269 SGLPKCDISTTDLAPLSKAYLTESKAATMRWLFVITPSLSGTLKSTRI 126
IS++ +P S ++ + + ++ F T S S + S+ +
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTL 383
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 3.9
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -1
Query: 431 RRFSSRIIEPAEGSAHAVSTSGPMQSVKNVTSLFSNFFSSSATGLRVYLRFTWPSGLPKC 252
+ F S ++E + VS + P +S N S +SSA+ + + P +PK
Sbjct: 176 QEFLSIVVENYKSMTTVVSEAFPPRSAPNTPSSHPMSAASSASPAEIGMEHAGPKMIPKA 235
Query: 251 DIS 243
S
Sbjct: 236 SSS 238
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 452 PSSSMWKRRFSSRIIEPAEGSAHAVSTS 369
P +++ FSS +PAEG+A VSTS
Sbjct: 121 PLFDEYRQHFSSIEKKPAEGNAFIVSTS 148
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +1
Query: 316 LKKLLNKDVTFLTDCIGPEVETACADPSAGSIILLENLRFHIEEEGKGVD 465
LK L + + + +GPE T + ++ E LR+H + G+ D
Sbjct: 73 LKSLQTINYDYNENSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFD 122
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 5.2
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = -1
Query: 491 SAFTLAPEASTPLPSSSMWKRRFSSRI--IEPAEGSAHAVSTSGPMQSVKN----VTSLF 330
S+ +A +S+P+PSSS +S+ + I + S A+S+S + + N +T+
Sbjct: 687 SSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTSVNSSTLITASS 746
Query: 329 SNFFSSSATGLRVYLRFTWPSGLPKCDISTTDLAPLSKAYLTESKAATMRWLFVITPSLS 150
SN SS T + T S + S T S++ LT S +T+ ++ S S
Sbjct: 747 SNTLLSSITSSSAIVSSTTVSNISSNLPSAT---ASSQSQLTNS--STLATSLYLSSSSS 801
Query: 149 GTLKST 132
T+ ++
Sbjct: 802 RTISTS 807
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 467 ASTPLPSSSMWKRRFSSRIIEPAEGSAHAVSTSGPMQSVKNVTSLFSNFFSS 312
AST L SSS+ SS + + + + S+S P+ S + S+F +S
Sbjct: 31 ASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITS 82
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 296 RVYLRFTWPSGLPKCDISTTDLAPLSKAYLTESK 195
RV R+ + PK D+S + +KAY + K
Sbjct: 95 RVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQK 128
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -1
Query: 185 MRWLFVITPSLSGTLKSTRIRTLLPVKLSASIL 87
M++L + TP +STR R LL V LS IL
Sbjct: 426 MKYLQIDTPESKEYPRSTRPRALLIVALSQLIL 458
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -1
Query: 503 TFSGSAFTLAPEASTPLPSSSMWKRRFSSRIIEPAEGSAHAVSTSGPMQSVKNVTSLFSN 324
T + S++ + +STP SSS SS + + S + S+S +S + +S +
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKS 198
Query: 323 FFSSSAT 303
SSS++
Sbjct: 199 SSSSSSS 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,691
Number of Sequences: 5004
Number of extensions: 36901
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -