Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335C05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.2  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    26   3.0  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    26   3.9  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   3.9  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   5.2  
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni...    25   6.8  
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    25   9.0  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    25   9.0  
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 306 LHHDNASSHTAHRTKEFLEQENIEL 232
           LH+ N S  T  R KE+LE+   E+
Sbjct: 15  LHNPNVSEETKQREKEYLEEHEGEV 39


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 36  EVFSAKPDTPLHTMEPIIEATIPLGSRGPQLLQVMKISGHTIYSL 170
           E+ SA+    +H+ME      +  G   PQL+  ++ISG  I+S+
Sbjct: 188 EITSAEELHTIHSMEAT-HIIVAAGPWTPQLIPNLRISGARIHSI 231


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = -1

Query: 143 FHHLKKLWTPASE----WNGCFNDWFHRMEG 63
           FH LK L+T  S     + GCF  WF +  G
Sbjct: 317 FHSLKVLFTVPSNRRSLFIGCFLQWFQQFSG 347


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 34  SKYSPRNPTHPSIRWNQSLKQPFHSEAGVHSF 129
           S+ S  NP+ PS  WN  L QP   E  V+SF
Sbjct: 378 SRASMGNPS-PS-NWNNRLLQPSSKEQAVYSF 407


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 249 QENIELLDHPPYSPDLSPNDFYTFPKIKNK 160
           QENI   D+   SP+ SP    T  KI+NK
Sbjct: 412 QENISSNDNSKSSPESSPPARKTTGKIENK 441


>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
           Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -3

Query: 405 EGQRTVGAEWYASICLPQVVSELRKENCNRRIILHHDNASSHTAHRTKEFLEQENIEL 232
           +G+  +G +    + +P +   +  E+ N   + HH  ++ HT    KE  EQE + L
Sbjct: 120 QGKTDIGGK---DLLVPIITDRMLPES-NDEKLKHHAESAIHTTVINKEDEEQERVAL 173


>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 502 LKXTKNCSFTECCKKNCGHVCL 437
           ++   + S    CKK CG VCL
Sbjct: 272 IQFASHLSLYNLCKKLCGQVCL 293


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 310 HPPSRQCEFSHRAQNKRVFRARKHRI 233
           HPP    +F H   ++ +++A++H +
Sbjct: 417 HPPDNLEDFDHPYLDRNIWQAKRHLV 442


>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 201 SGRGCTADGLIILCFLALKTLLF 269
           +G GC      I CFLA K L F
Sbjct: 455 AGGGCCTAAAFIKCFLAQKDLSF 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,744
Number of Sequences: 5004
Number of extensions: 52231
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)