Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335C03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 29 0.56
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 27 2.2
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 27 2.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 27 2.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 3.0
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 26 3.0
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 26 3.9
SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|... 25 5.2
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 25 5.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 6.8
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 25 6.8
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 25 9.0
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 9.0
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 9.0
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 28.7 bits (61), Expect = 0.56
Identities = 22/87 (25%), Positives = 44/87 (50%)
Frame = +2
Query: 74 DVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKMS 253
+VE + Q R + I + +S+R K +++ + S+ I +L ++EE ++
Sbjct: 9 NVEDLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENI--DLRTTAINLEE--QLE 64
Query: 254 DIHNRNTRNKHKLVVPMSRLHKIRNSF 334
+ N N NK KL ++R H+ ++F
Sbjct: 65 TVQNENEENKTKLAALLNRFHEETDNF 91
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 188 SQYIFENLMYVRKHIEEFPKMSD 256
+Q IF +L++ +HIEEF + S+
Sbjct: 341 AQQIFRSLVFFLRHIEEFEEASE 363
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 14 YFSYFHSVMSYGILLWGNAADVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPS 190
+ +Y V I LWGNA D+ +L + + N+ ++ + E K I V P+
Sbjct: 175 HIAYMVFVEMAQISLWGNATDLS---LLTNLSYEELQNLQGQKVVEESQKNILVNDFPT 230
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 26.6 bits (56), Expect = 2.2
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 77 VEMIFILQKRAIRAIYNMHSRESLREKFKEI--KVLTMPSQYIFENLMYVRKHIEEFPKM 250
+E +FI + R+I + E L+ + + +V T+ S +I L + + +EF +
Sbjct: 547 LESVFISKPRSIGDAQKLEILEYLQSQSSTVSNQVFTLLSNFIQNPLFVLDECFDEFRNL 606
Query: 251 SDIHNRNT 274
+HN +T
Sbjct: 607 ILMHNSHT 614
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 291 SLCLFLVFLL-CMSDILGNSSICLRTYIKF 205
SL ++ VFLL C++++L + C R ++ F
Sbjct: 1586 SLYMYNVFLLQCLTELLSGYNACKRCFLNF 1615
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 300 GTTSLCLFLVFLLCMSDILGNSSI 229
GTTS+C+F LL ++I+ N+ I
Sbjct: 94 GTTSVCVFAAELLRQAEIMVNAKI 117
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 25.8 bits (54), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 422 HLCNKAYYKVNDYLEDCTKWE 484
HL K+YY N ++ C WE
Sbjct: 242 HLVQKSYYLQNRHVFPCVHWE 262
>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
Isd11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +2
Query: 122 YNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVV 298
Y ++ R+KFKE+KV + P+++ + + K +E + S I+ NK LVV
Sbjct: 26 YREYTIRRTRDKFKELKVESDPAKF-EQGIKDSEKLLEIIQRQSIIN--GMYNKRNLVV 81
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -2
Query: 133 VHVINSTYSSFLQNKYH 83
V + + YSS LQNKYH
Sbjct: 166 VRISSDKYSSALQNKYH 182
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/57 (22%), Positives = 26/57 (45%)
Frame = +2
Query: 257 IHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHL 427
++ + R K + P+S + NS G + + P+ + + RFK T +E +
Sbjct: 213 LYLESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNERFKDTSEESI 269
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 59 WGNAADVEMIFILQKRAIRAIYNMHSRESLREKFKE 166
W +A DV+ + L + A +++ + E L+++F+E
Sbjct: 1030 WTHACDVDQMNSLLREAFVLLHSNNIMERLKQEFEE 1065
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 24.6 bits (51), Expect = 9.0
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Frame = -3
Query: 321 ILCNLLIGTTSLCLFLVFLLCMSDILGNS-SICLRTYIKFSKMYWDGI-VR-------TL 169
++ ++ + L+ + LL + +ILGNS I IK + + + VR TL
Sbjct: 334 VISRTILAPLAAALWPLSLLKVGNILGNSWRIAFNLSIKAGEALANALCVRAQGMRPVTL 393
Query: 168 ISLNFSLRDSLECML*IARIALFCRINIISTSAALPHSKMP*DMTLW 28
I + R LEC+L +A N++ + + + MP D LW
Sbjct: 394 IGFSLGARTILECLLHLADRG---ETNLVE-NVIVMGAPMPTDAKLW 436
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 248 MSDIHNRNTRNKHKLVVPMSRLHKIRNS 331
+SD+ N+ N ++V +S +H +RNS
Sbjct: 1574 LSDLDNKQQLNDQIIIVFVSWVHLLRNS 1601
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 24.6 bits (51), Expect = 9.0
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Frame = +2
Query: 155 KFKEIKVLTMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSF 334
+ + ++ L + + + +M V H++ F K S + R KH+ + + K+
Sbjct: 153 EMETMEFLNILAPHGMPRIMGVLTHLDLFKKTSTLREAKKRLKHRFWTELYQGAKLFYLS 212
Query: 335 GCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLC---NKAYYKVNDYLEDCT 475
G L+ R D + L++ RF +K N+ Y + D +ED T
Sbjct: 213 GVLNGRY-----PDREILNLSRFISVMKFRPLRWRNQHPYLLADRMEDLT 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,252
Number of Sequences: 5004
Number of extensions: 44813
Number of successful extensions: 130
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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