Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335C03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U61954-4|AAK29804.1|  277|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81030-1|CAB02703.1| 1204|Caenorhabditis elegans Hypothetical
           protein C01G10.1 protein.
          Length = 1204

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +2

Query: 200 FENLM-YVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQD 376
           F N M ++ ++++    +++    N     KL+V M    ++R    CLS     +  Q 
Sbjct: 507 FHNFMTHLSQNLKNIKVITNKSLPNDTKIDKLLVEMLDTSQLRGISKCLS----QEFMQP 562

Query: 377 VQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTK 478
           ++ L +     T+++   NK   K+N YL++  K
Sbjct: 563 LRVLEVIEAMITVRQFAGNKTVLKMNQYLDELAK 596


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = +2

Query: 113 RAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKL 292
           R IYN   + +LR+ F  +K+ +   +    +  ++ +  +EF  + DI +R    K+KL
Sbjct: 233 RTIYNKRLQFALRKLFVVMKLPSAQIEEFKLDFDFMGRGSDEFEDIYDIGSRRVSFKNKL 292

Query: 293 VVPMSRLHKIRNSFG 337
           +   + L  I   FG
Sbjct: 293 L--SASLRTIDKEFG 305


>Z92806-3|CAB07256.1|  202|Caenorhabditis elegans Hypothetical
           protein K10G4.3 protein.
          Length = 202

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 24/108 (22%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
 Frame = +2

Query: 149 REKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSR-LHKIR 325
           +    + + + + +++  EN+    + I EF +  D+ NRN +N  K+   + +   KIR
Sbjct: 84  KHNLDDAREILIANKWKLENIEESYEKISEFQRQLDL-NRNNQNNDKIYEAIKKEKEKIR 142

Query: 326 NSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLED 469
                 +V   N+  +D +N+  + F+ T++ H  N    ++ D++E+
Sbjct: 143 K-----NVYERNEQLRDFKNIP-YGFQPTLELH--NLMQDQIEDFIEE 182


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
           protein Y73F8A.5 protein.
          Length = 1019

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +1

Query: 61  GQCGRCRNDIYSAEKSYTC 117
           GQCGRC    YS  KS  C
Sbjct: 298 GQCGRCPESQYSGFKSEKC 316


>Z83116-6|CAB05565.2|  302|Caenorhabditis elegans Hypothetical
           protein M01B2.7 protein.
          Length = 302

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 369 GILLYRRTDKHPNEFRILCNLLIGTTSLCLFLVF 268
           G LL      H N+ R +CN+LI     C  L+F
Sbjct: 22  GNLLMVLVTLHSNKLRSICNILICVCCFCDLLLF 55


>U61954-4|AAK29804.1|  277|Caenorhabditis elegans Hypothetical
           protein F41H10.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = -2

Query: 238 LLNMFTNIHQIFKDVLGWHS 179
           L+ MF++ H+IF DV+ W++
Sbjct: 79  LILMFSHPHEIFHDVIDWYN 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,692
Number of Sequences: 27780
Number of extensions: 257528
Number of successful extensions: 757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)