Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B12f
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.07 |||translation initiation factor eIF3f|Schizosaccharo...    63   3e-11
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    26   2.9  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.8  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   5.0  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.7  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   8.8  

>SPBC4C3.07 |||translation initiation factor
           eIF3f|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 62.9 bits (146), Expect = 3e-11
 Identities = 29/82 (35%), Positives = 46/82 (56%)
 Frame = +1

Query: 118 TSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNH 297
           + D   +E+ +CF VPH E ++QVE E+ Y   +Y L+ + N  E +VGW+AT  ++   
Sbjct: 56  SEDGREIEIKSCFAVPHNESSEQVEVEMEYHRAMYHLHLKANPREVVVGWYATSPDLDAF 115

Query: 298 SSVIHEYYSRECREPVHVTLDT 363
           S++I   Y+    EP    L T
Sbjct: 116 SALIQNLYASPA-EPGTAPLGT 136


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 442 HVHSCRCHSHV 474
           H+H CRCH+++
Sbjct: 69  HIHCCRCHTYI 79


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 161 TQKQLVTSTTPLSLVPAATAQHNLTT 84
           T    VTST   S+VP  +  HN TT
Sbjct: 56  TSTHSVTSTNITSIVPPPSTSHNSTT 81


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 248 LKVLLVGGRLAMK*PTTPLLYTSITPV 328
           LKV  V   +++  PTTP +Y S TPV
Sbjct: 376 LKVAPVSELISVIPPTTPQIYISRTPV 402


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 339 ACPCYSGHFTGWRSNGFTCICFVYH*ECQME 431
           A P  SG F GW       +C+ Y  +C  E
Sbjct: 446 AAPMVSGIFLGWGFLYVLAVCYSYLVDCYHE 476


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 143 TSTTPLSLVPAATAQHNLTTPL 78
           TS+TPLS V + TA    +TPL
Sbjct: 338 TSSTPLSSVNSTTATSASSTPL 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,748
Number of Sequences: 5004
Number of extensions: 47782
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)