Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335B12f
(513 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0034 - 228939-229028,229117-229230,229309-229430,229827-23... 92 3e-19
04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124... 42 3e-04
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130... 31 0.41
08_02_1145 - 24674319-24674403,24674691-24674746,24674885-246749... 30 1.3
02_05_0540 + 29852109-29852195,29852304-29852477,29852585-298528... 29 1.7
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 29 2.2
02_04_0414 - 22685981-22686178,22686374-22686465,22686580-226866... 29 2.2
11_01_0433 - 3323372-3324616,3324708-3324905 28 3.8
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810... 28 3.8
01_05_0108 + 18183250-18183336,18183451-18183962,18184074-181842... 28 3.8
05_05_0039 - 21782093-21782320,21782383-21782754,21783031-217834... 28 5.1
02_01_0706 + 5270233-5270326,5270767-5270914,5271018-5271089,527... 28 5.1
11_01_0127 + 1031690-1031952,1032850-1032857,1034679-1034927,103... 27 8.8
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283... 27 8.8
08_01_0090 - 649631-651162,653189-655019,655313-655365,655731-65... 27 8.8
03_04_0073 + 17059358-17059921 27 8.8
03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761... 27 8.8
02_01_0372 + 2668597-2668671,2669021-2669126,2669279-2669334,266... 27 8.8
>05_01_0034 -
228939-229028,229117-229230,229309-229430,229827-230056,
230458-230537,230641-230859
Length = 284
Score = 91.9 bits (218), Expect = 3e-19
Identities = 38/91 (41%), Positives = 59/91 (64%)
Frame = +1
Query: 130 GVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWATGNEVTNHSSVI 309
G V V N + VPH E DQV ++ Y ++Y + +VN E IVGW++TG V+ S++I
Sbjct: 55 GTVHVRNSYVVPHNESPDQVALDIEYHHNMYASHHKVNPKEVIVGWFSTGFGVSGGSTLI 114
Query: 310 HEYYSRECREPVHVTLDTSLAGGRMGLRAYV 402
H++YSRE + P+H+T+DT G ++AY+
Sbjct: 115 HDFYSREVQSPIHLTVDTGFTRGDASIKAYI 145
>04_03_0650 -
18411588-18411645,18412020-18412172,18412340-18412407,
18412499-18412600,18412695-18412766,18412843-18412891,
18412971-18413104,18413488-18413554,18414471-18414574,
18414677-18414793,18415538-18415647,18415763-18415772
Length = 347
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +1
Query: 133 VVEVTNCFCVPHKEHADQVEAE-LNYAMDVYELNRRVNSSESIVGWWAT---GNEVTNHS 300
V+EVTNCF P +E ++ +A+ NY +++ R VN + VGW+ + G+ T
Sbjct: 69 VLEVTNCFPFPMREDDEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVEL 128
Query: 301 SVIHEYYSRECREPVHVTLDTSLAG-GRMGLRAYVL 405
Y R V + D S + G + L+A L
Sbjct: 129 IETFMNYQENIRRCVCIVYDPSRSNQGVLALKALKL 164
>04_04_1468 +
33811471-33811657,33811888-33811980,33812899-33813027,
33813089-33813166,33813377-33813435,33813522-33813644,
33814225-33814282,33814383-33814468,33814564-33814635
Length = 294
Score = 31.5 bits (68), Expect = 0.41
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 106 VAAGTSDKGVVEVTNCFCVPHKEHADQVE---AELNYAMDVYELNRRVNS 246
V GTS +G V+VTN + VP +E + NY ++ + +R+N+
Sbjct: 45 VLLGTSSRGSVDVTNSYAVPFEEDDKDPRIWFLDHNYHESMFSMFKRINA 94
>08_02_1145 -
24674319-24674403,24674691-24674746,24674885-24674965,
24675063-24675137,24675418-24675479,24675857-24675950,
24676674-24676762,24676864-24677194
Length = 290
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = +1
Query: 223 ELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSL 369
EL ++V ++GW++TG++V + IH+ PV++ L+ ++
Sbjct: 109 ELYKKVFPDFYVLGWYSTGSDVRDTDMQIHKALMDINESPVYLLLNPAI 157
>02_05_0540 +
29852109-29852195,29852304-29852477,29852585-29852841,
29852954-29853125,29853513-29853551,29853647-29853715,
29853795-29853911,29854190-29854401,29854578-29854736,
29854810-29855009,29855100-29855266,29855346-29855442,
29855560-29855651,29855861-29856139
Length = 706
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 300 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 196
G V + +AS+PP FR +++ Q+V I + +KF
Sbjct: 442 GSVNWKLASKPPIKLPFRKLENCNQVVKIGKELKF 476
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 410 VHKTYARKPIRPPASEVSRVTW 345
+HKT RK I P +VSR+ W
Sbjct: 632 LHKTIKRKEINSPQDDVSRMVW 653
>02_04_0414 -
22685981-22686178,22686374-22686465,22686580-22686676,
22686801-22686916,22687314-22687513,22687588-22687740,
22687960-22688171,22688403-22688519,22688613-22688687,
22688815-22688853,22689518-22689689,22689809-22690056,
22690151-22690324,22690418-22690504
Length = 659
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 300 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 196
G+V + AS+PP FR +++ Q++ I + +KF
Sbjct: 439 GIVNWKQASKPPIIMPFRKVENGNQVIEIGKELKF 473
>11_01_0433 - 3323372-3324616,3324708-3324905
Length = 480
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 240 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 145
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 321 DAAVVLMLIHQFITFGFACTPLYFVWE-KAIG 351
>01_05_0320 -
20874691-20875230,20879337-20879590,20880014-20881087,
20881259-20881511,20881548-20882369
Length = 980
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 104 LLLQARATKEWWK*PTASACHTKN-MPIKSK 193
+L A +KEWW +ACH N +P+K K
Sbjct: 504 MLDTAGLSKEWWGEAVLTACHVLNKIPMKHK 534
>01_05_0108 +
18183250-18183336,18183451-18183962,18184074-18184245,
18184984-18185022,18185117-18185185,18185281-18185397,
18185842-18186056,18187085-18187240,18187328-18187527,
18187927-18188084,18188321-18188417,18188738-18188829,
18189018-18189191
Length = 695
Score = 28.3 bits (60), Expect = 3.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -1
Query: 300 GVVGYFIASRPPTNNTFRGIDSSVQLVNIHRVIKF 196
G V + +A+RPP FR +++ Q++ I + +KF
Sbjct: 469 GSVNWKMANRPPIKLPFRKVENCNQVLKIGKELKF 503
>05_05_0039 -
21782093-21782320,21782383-21782754,21783031-21783496,
21784896-21784993,21785179-21785362,21785462-21785574,
21785942-21786127,21786191-21786364
Length = 606
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -1
Query: 240 DSSVQLVNIHRVIKFRFDLIGMFFVWHAEAVG 145
D++V L+ IH+ I F F ++FVW +A+G
Sbjct: 311 DAAVILMLIHQFITFGFACTPLYFVWE-KAIG 341
>02_01_0706 +
5270233-5270326,5270767-5270914,5271018-5271089,
5271153-5271263,5271363-5271434,5271533-5271604,
5272126-5272197,5272281-5272346,5272426-5272491,
5272601-5272971,5273203-5273456,5273886-5274157,
5274333-5274474,5275174-5275313,5275381-5275537,
5275797-5275965,5276048-5276088
Length = 772
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 208 AMDVYELNRRVNSSESIVGWWATGNEVTNHSSVIHEYYSRECREPVHVTLDTS--LAGGR 381
A+ ++EL R ++S + GW + G + ++ CR+ V L+ S GG
Sbjct: 32 ALGLWELYRTLDSPWQLSGWTSQGGDPCGRGGEQRPWHGVLCRDSSIVALNISGLGVGGW 91
Query: 382 MGL 390
+GL
Sbjct: 92 LGL 94
>11_01_0127 +
1031690-1031952,1032850-1032857,1034679-1034927,
1034938-1035009,1036609-1036724,1037482-1037545,
1037742-1037773,1037804-1037850,1038627-1038660,
1039308-1039652,1040425-1040718,1040968-1041232,
1041359-1041480,1041754-1042059
Length = 738
Score = 27.1 bits (57), Expect = 8.8
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Frame = +1
Query: 265 WWATGNEVTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMGLRAYVLCTIRSAKWKARLH 444
WW E SSV + RE T+D GGR G R+ VL R + ++
Sbjct: 105 WWQVAGEKGEFSSVERHRSRQVNRERCRGTIDAGGNGGR-GRRSKVLSRTRWLSPELAIY 163
Query: 445 --------VHSCRCHSHVL 477
+H C+ +H++
Sbjct: 164 LACLTHPFLHGCKIETHLI 182
>10_01_0267 -
2828966-2829340,2831164-2831629,2833390-2833487,
2833782-2834078,2834287-2834694
Length = 547
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 240 DSSVQLVNIHRVIKFRFDLIGMFFVW 163
D++V L+ IH+ I F F ++FVW
Sbjct: 327 DAAVVLMLIHQFITFGFACTPLYFVW 352
>08_01_0090 -
649631-651162,653189-655019,655313-655365,655731-655735,
656209-656411,656837-657292,657718-657805,657917-658017,
658404-658631,659128-659445,659528-659812,660148-660711
Length = 1887
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 286 VTNHSSVIHEYYSRECREPVHVTLDTSLAGGRMG 387
V+ +SS HE++ E E V V+ +S AG R+G
Sbjct: 34 VSYNSSKRHEHFEEEDEEGVVVSATSSSAGHRVG 67
>03_04_0073 + 17059358-17059921
Length = 187
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 367 LAGGRMGLRAYVLCTIRSAKWKARLHVHSCRCHS 468
LAG +R C + +W ARL V+S CH+
Sbjct: 46 LAGAAQAVRDGAPCL--ATRWAARLAVYSAACHA 77
>03_02_0338 +
7614199-7614450,7614518-7614703,7614815-7614927,
7615023-7615206,7615343-7615440,7616113-7616578,
7617342-7617683
Length = 546
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 240 DSSVQLVNIHRVIKFRFDLIGMFFVW 163
D++V L+ IH+ I F F ++FVW
Sbjct: 337 DAAVVLMLIHQFITFGFACTPLYFVW 362
>02_01_0372 +
2668597-2668671,2669021-2669126,2669279-2669334,
2669830-2669907,2669993-2670066,2670147-2670280,
2670377-2670472,2670703-2670854
Length = 256
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 91 RLCCAVAAGTSDKGVVEVTNCFCVPHKEHADQVEAEL-NYAMDVYE 225
+L CAV +++ V++ N HK H D + + L DV++
Sbjct: 128 KLSCAVVQQATNEAVIKQLNLELEAHKAHIDMLNSRLEQVTADVHQ 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,473,970
Number of Sequences: 37544
Number of extensions: 331885
Number of successful extensions: 889
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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