Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335B12f
(513 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical pr... 65 3e-11
Z83109-8|CAB05521.2| 311|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical pr... 30 1.1
AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical ... 30 1.1
U40942-3|AAU05564.1| 487|Caenorhabditis elegans Hypothetical pr... 28 3.4
Z69718-5|CAA93539.1| 236|Caenorhabditis elegans Hypothetical pr... 28 4.5
Z69716-8|CAA93530.1| 236|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 27 6.0
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 27 6.0
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 27 6.0
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 27 6.0
Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z47809-3|CAA87781.2| 322|Caenorhabditis elegans Hypothetical pr... 27 7.9
U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding pro... 27 7.9
U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein. 27 7.9
U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein... 27 7.9
U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein... 27 7.9
AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and gl... 27 7.9
AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and gl... 27 7.9
>Z47808-5|CAA87773.1| 294|Caenorhabditis elegans Hypothetical
protein D2013.7 protein.
Length = 294
Score = 64.9 bits (151), Expect = 3e-11
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 12/114 (10%)
Frame = +1
Query: 97 CCAVAAGTSDKGVVEVTNCFCVPHKEHADQVEAELNYAMDVYELNRRVNSSESIVGWWAT 276
C G +KG ++VTNCF +P E D +E + + + ++ + +E VGW+ T
Sbjct: 37 CMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQMISALKKTSPNEQPVGWFLT 96
Query: 277 GNEVTNHSSVIHEYYSRECRE--------PVHV-TLDTSLAGG---RMGLRAYV 402
+++T+ + H+YY R E P+ V T+DT+ +G RM +RAY+
Sbjct: 97 TSDITSSCLIYHDYYVRVITEASARRESPPIVVLTIDTTFSGDMSKRMPVRAYL 150
>Z83109-8|CAB05521.2| 311|Caenorhabditis elegans Hypothetical
protein F44G3.9 protein.
Length = 311
Score = 30.7 bits (66), Expect = 0.64
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -2
Query: 149 LVTSTTPLSLVPAAT---AQHNLTTPLHICIASGLCDQGN 39
L TST PL + P AQ+N+T P+ +C G GN
Sbjct: 13 LETSTVPLVIQPQIVNDPAQNNITLPITLCAVCGDTSNGN 52
>Z68760-4|CAE17822.1| 160|Caenorhabditis elegans Hypothetical
protein F36H1.9 protein.
Length = 160
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 149 TASACHTKNMPIKSKRNLITRWMFTS 226
T ACHT M + K+N IT W +++
Sbjct: 55 TLVACHTLQMFLAEKKNTITHWKYST 80
>AF016423-8|AAB65319.1| 409|Caenorhabditis elegans Hypothetical
protein F40A3.7 protein.
Length = 409
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +2
Query: 8 FHINVIVNLLNFLGHISQMQYKCVKAL*GYVVLLLQ----ARATKEWWK*P 148
F+++ V+L++ S + + CV A+ G +L +Q ARAT WWK P
Sbjct: 96 FYLHSKVHLISLANWCSSVAHWCVIAVCGDRLLGIQNPLYARATWRWWKLP 146
>U40942-3|AAU05564.1| 487|Caenorhabditis elegans Hypothetical
protein K02E10.4b protein.
Length = 487
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 164 GTQKQLVTSTTPLSLVPAATAQHNLTTPLHICIASGL 54
G +L +S PL +P +T+QH + H C +GL
Sbjct: 98 GQLPKLDSSLRPLQCLPGSTSQHLICGANHNCFFTGL 134
>Z69718-5|CAA93539.1| 236|Caenorhabditis elegans Hypothetical
protein W06D11.1 protein.
Length = 236
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 356 WTLHWLEVEWVYVHMFCVPLGVPNGKQGCMFTPVDVTLTCYE 481
WT V +YVH +GV NG+ G +F+PVD+++ ++
Sbjct: 74 WTTGQNVVATIYVHN----IGV-NGRVGRLFSPVDISIYLFK 110
>Z69716-8|CAA93530.1| 236|Caenorhabditis elegans Hypothetical
protein W06D11.1 protein.
Length = 236
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 356 WTLHWLEVEWVYVHMFCVPLGVPNGKQGCMFTPVDVTLTCYE 481
WT V +YVH +GV NG+ G +F+PVD+++ ++
Sbjct: 74 WTTGQNVVATIYVHN----IGV-NGRVGRLFSPVDISIYLFK 110
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 143 TSTTPLSLVPAATAQHNLTTP 81
T TP S VPA + NLTTP
Sbjct: 444 TPATPRSSVPATPTESNLTTP 464
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 143 TSTTPLSLVPAATAQHNLTTP 81
T TP S VPA + NLTTP
Sbjct: 394 TPATPRSSVPATPTESNLTTP 414
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 143 TSTTPLSLVPAATAQHNLTTP 81
T TP S VPA + NLTTP
Sbjct: 444 TPATPRSSVPATPTESNLTTP 464
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 143 TSTTPLSLVPAATAQHNLTTP 81
T TP S VPA + NLTTP
Sbjct: 444 TPATPRSSVPATPTESNLTTP 464
>Z78013-8|CAN99686.1| 373|Caenorhabditis elegans Hypothetical
protein F15B9.10 protein.
Length = 373
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 87 CKVMLCCCCRHERQRSGGSNQ 149
C + CCCC R R GG NQ
Sbjct: 238 CCCIYCCCC---RGRGGGGNQ 255
>Z47809-3|CAA87781.2| 322|Caenorhabditis elegans Hypothetical
protein F42A8.3 protein.
Length = 322
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 166 VARRSSWLLPPLLCRSCLQQQHN 98
VA ++W +PP++C C Q N
Sbjct: 57 VACATNWSIPPVVCTKCFQNYIN 79
>U49795-1|AAB03859.1| 673|Caenorhabditis elegans DNA-binding
protein LAG-1 protein.
Length = 673
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 164 HTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265
H P+ RN T WMFT+ T + + + LV
Sbjct: 610 HCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>U49794-1|AAB03858.1| 673|Caenorhabditis elegans lag-1 protein.
Length = 673
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 164 HTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265
H P+ RN T WMFT+ T + + + LV
Sbjct: 610 HCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
>U41746-5|AAT81186.1| 492|Caenorhabditis elegans Innexin protein
10, isoform b protein.
Length = 492
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 446 TCNLAFHLALLMVHKTYARKPIRPPASEVSRVTW 345
TCNL LA+L+ K + KP+ ++ +W
Sbjct: 30 TCNLLIGLAVLVSFKQFGGKPVECLVPDIFSSSW 63
>U41746-4|AAA83332.1| 559|Caenorhabditis elegans Innexin protein
10, isoform a protein.
Length = 559
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 446 TCNLAFHLALLMVHKTYARKPIRPPASEVSRVTW 345
TCNL LA+L+ K + KP+ ++ +W
Sbjct: 30 TCNLLIGLAVLVSFKQFGGKPVECLVPDIFSSSW 63
>AF100663-8|AAM98006.1| 671|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform b protein.
Length = 671
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 164 HTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265
H P+ RN T WMFT+ T + + + LV
Sbjct: 608 HCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 641
>AF100663-7|AAC68978.3| 673|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein1, isoform a protein.
Length = 673
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 164 HTKNMPIKSKRNLITRWMFTS*TEESIPLKVLLV 265
H P+ RN T WMFT+ T + + + LV
Sbjct: 610 HCSIPPVSQVRNEQTHWMFTNRTTGDVEVPISLV 643
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,986,086
Number of Sequences: 27780
Number of extensions: 282288
Number of successful extensions: 706
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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