Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335B10f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 33 0.034
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 28 0.73
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c... 28 0.73
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 3.9
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 5.2
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 25 6.8
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 6.8
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 25 6.8
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 25 6.8
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 9.0
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 25 9.0
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 25 9.0
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 9.0
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 32.7 bits (71), Expect = 0.034
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Frame = -1
Query: 428 KLRLERFFQIFAIKINAVLKIVFYTFAXYGLEYRFISQEXSLHEFQFCSVYVPPTIPTKG 249
+LR+ R + ++ I + +LKI Y F ++Y + E ++ EF + +P T+
Sbjct: 157 ELRMRRRYLVYKIYVT-LLKIDIYFFLGVTVQYVMVLPEDAVVEFVLTILVLPLTVLILT 215
Query: 248 LTFHNV--------------FTIRIPYVIPFLFEFHISALPFHWTRFIPILTHFFTYLLP 111
L+F++V + IPY++ + + S ++ ++T F L
Sbjct: 216 LSFNSVSSENMFLMMTVQFFYVCGIPYILFKIIRMYTSTQKEYYASSKQMITTFSVITLL 275
Query: 110 SLLFIIWI 87
LLF I I
Sbjct: 276 LLLFTIAI 283
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 28.3 bits (60), Expect = 0.73
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 117 EICKEMCENWDKASPMERKRAYMELKKKWNNVRDSYRKDVMKSQ 248
+I +E C+ D+ M+ KRA M K +NV + R +++ S+
Sbjct: 44 KIVREQCDAIDQTYDMKLKRASMAQKIAKSNVLNKSRLEILNSK 87
>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 222
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -1
Query: 224 IRIPYVIPFLFE-FHISALPFHWTRFIPILTHFFTYLLPSLLFIIW 90
I + +++ ++ F+++ P + P+L + F+Y+LPS LF I+
Sbjct: 53 INVAHLVGLAYQIFYVTLDPLDGLLYSPVL-YLFSYILPSKLFTIF 97
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 3.9
Identities = 8/36 (22%), Positives = 22/36 (61%)
Frame = +3
Query: 165 ERKRAYMELKKKWNNVRDSYRKDVMKSQALGRNSRR 272
E +A +L ++W++V++ Y+K + + +N ++
Sbjct: 212 EDYKAGWQLDREWDSVQEKYKKGAKLEEGMVKNEKK 247
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/69 (18%), Positives = 32/69 (46%)
Frame = +3
Query: 156 SPMERKRAYMELKKKWNNVRDSYRKDVMKSQALGRNSRRYIYAAELEFMERXFLRNKSVF 335
S +++ +LK +++R YRKD+ + R +Y ++ + + +
Sbjct: 418 SDLKKYEKSRKLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLIDVFALRAGNEKGEDEA 477
Query: 336 ETIXCESIK 362
+T+ C S++
Sbjct: 478 DTVGCCSLR 486
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 200 FLFEFHISALPFHWTRFIPILTHFFTYLLPSLLF--IIWIVVIFMIHV 63
FL F + A WT+F + F+ +L LLF I+ +VV + +++
Sbjct: 163 FLSSFILYAYHESWTKFARERSQEFSLILFGLLFPGIVTMVVFYALYM 210
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/30 (36%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
Frame = +3
Query: 186 ELKKKWNNV---RDSYRKDVMKSQALGRNS 266
+ +KK++++ RDS R+D+ K ++ G+NS
Sbjct: 1409 DTRKKYDSIIKKRDSLREDLEKFRSTGKNS 1438
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -3
Query: 183 YKRASFPLDSLYPNSHTFLYISPSKLALYYMDCGNLHDPR 64
Y +++F L YP+ + S + + + C NLH R
Sbjct: 141 YDQSTFSLSLFYPDGKEYGSNVDSLITSFVLTCKNLHRKR 180
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/59 (23%), Positives = 26/59 (44%)
Frame = -1
Query: 299 EFQFCSVYVPPTIPTKGLTFHNVFTIRIPYVIPFLFEFHISALPFHWTRFIPILTHFFT 123
+ +F + +P P +H V I +++ FE + P+ W F +L H F+
Sbjct: 467 DLKFVAKSLPSNGPFSSFIYH-VKLNAIEHILLSSFEQKLHQ-PYQWPHFFAVLDHVFS 523
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/59 (22%), Positives = 27/59 (45%)
Frame = +3
Query: 51 QCIWNVDHEDYHNPYNKEQAWKEICKEMCENWDKASPMERKRAYMELKKKWNNVRDSYR 227
Q +WN+ +E H+ + + + E ++ + YME+ KK+ N D ++
Sbjct: 74 QGLWNL-YESTHDISELHKITPILASKFLELEEQNKCLNTVNKYMEVVKKYGNKADEFK 131
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 15 DIELLISLVKQ--HQCIWNVDHEDYHNPYNKEQAWKEICKEMCENWDKASPMERKRAYME 188
+IEL I L Q C+ ++ D + + + +++CE+W K ++ E
Sbjct: 332 NIELFIRLYSQMYRHCVPIIEIYDTSIKFYMKHGRFGLLEKVCESWTKQFLGSLEKQNNE 391
Query: 189 LKKK 200
+KKK
Sbjct: 392 VKKK 395
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 126 KEMCENWDKASPMERKRAYMELKKKW--NNVRDSYRKDVMKSQALGRNSRRYIYAAELEF 299
++ C+N S E+K L + + N + DS D + N+ + + AEL+F
Sbjct: 627 RQRCKNL-MTSIEEQKSELSNLYESFDPNGIHDSLSLDADAPFTVNENNNKNLSIAELKF 685
Query: 300 MERXFLRNKS 329
+ RN++
Sbjct: 686 QVAAYERNEA 695
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +3
Query: 75 EDYHNPYNKEQAWKEICKEMCENWDK-ASPMERKRAYMELKKKWNNVRDSYRKDVMKSQA 251
EDY + ++ E+ + E+W K AS + +K LK + + R+++ +
Sbjct: 205 EDYSSKFSSEELALRKLADDPESWRKLASELRKKSRQQYLKPRAQQQLEILRREIRDEEQ 264
Query: 252 LGRNSRRYIYAAELEFMER 308
L + + AE+ +E+
Sbjct: 265 LFAGEK--LTQAEIRELEK 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,890
Number of Sequences: 5004
Number of extensions: 44410
Number of successful extensions: 138
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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