Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    23   1.3  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   2.2  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    26   3.9  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    25   6.8  
SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.0  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 23.4 bits (48), Expect(2) = 1.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 462 QYSLFQFLIHLQLLYKYIFYDKFFFCNIIP 373
           QYS+   +    L  KY+    F  CNIIP
Sbjct: 458 QYSVSDAVATYFLYMKYVHPFIFSLCNIIP 487



 Score = 22.2 bits (45), Expect(2) = 1.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 276 DNVTICSASCLCRCILSFCLCNKGVGLPSRKV 181
           D V       LC  +L+   C K + LP++ V
Sbjct: 491 DEVLRKGTGTLCETLLTVEACTKNIILPNKHV 522


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 471 QK*QYSLFQFLIHLQLLYKYIFYDKFFFCNII 376
           QK Q S+ + LI  +L  KY+FY  F + + I
Sbjct: 495 QKEQKSVDKHLIRNKLCEKYLFYSNFIWISFI 526


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 354 TTDSNQKE*CCRRKIYHKKCIC 419
           TT + QK   CRRK++  K IC
Sbjct: 236 TTAATQKCPVCRRKVHPNKVIC 257


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 453 LFQFLIHLQLLYKYIFYDKFFFCNI 379
           LFQ   ++QL   Y+ Y+K   C I
Sbjct: 219 LFQGFYYMQLNVYYVLYEKMSHCEI 243


>SPAC15A10.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 190

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +1

Query: 103 YEKLARRKR----SSSEPECRRNSDRWPGLHL 186
           +EK+  RKR    SSS+P+       WPG+ +
Sbjct: 128 WEKVPLRKRIKIISSSQPDDNDEESTWPGVFI 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,647,489
Number of Sequences: 5004
Number of extensions: 27397
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)