Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B09f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113553-1|AAM29558.1|  126|Drosophila melanogaster RH01479p pro...    82   5e-16
AE013599-478|AAF59209.1|  126|Drosophila melanogaster CG1577-PA ...    82   5e-16

>AY113553-1|AAM29558.1|  126|Drosophila melanogaster RH01479p
           protein.
          Length = 126

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 46/113 (40%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
 Frame = +2

Query: 59  TITGLRSFS-SCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTPXXXXXXXXX 235
           T T  RS + +      + WR A+GLP N NA G LT+ PDYT+LDGRPTP         
Sbjct: 14  TSTAQRSIALTAPRAIDQKWRAAKGLPENPNAFGPLTNLPDYTYLDGRPTPLGANQKRRL 73

Query: 236 XXXXXXAEQIVTLSSELQFAKDRYXXXXXXXXXXXXXXLNNRLKPKGMMLQKK 394
                 A +IV LS EL+FAK R+              + ++LKPKG  L KK
Sbjct: 74  IKQQEIATRIVELSGELEFAKQRHERLKANAESEKQRLIRSKLKPKGHFLLKK 126


>AE013599-478|AAF59209.1|  126|Drosophila melanogaster CG1577-PA
           protein.
          Length = 126

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 46/113 (40%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
 Frame = +2

Query: 59  TITGLRSFS-SCSALFTKNWRVARGLPVNRNAEGILTDGPDYTFLDGRPTPXXXXXXXXX 235
           T T  RS + +      + WR A+GLP N NA G LT+ PDYT+LDGRPTP         
Sbjct: 14  TSTAQRSIALTAPRAIDQKWRAAKGLPENPNAFGPLTNLPDYTYLDGRPTPLGANQKRRL 73

Query: 236 XXXXXXAEQIVTLSSELQFAKDRYXXXXXXXXXXXXXXLNNRLKPKGMMLQKK 394
                 A +IV LS EL+FAK R+              + ++LKPKG  L KK
Sbjct: 74  IKQQEIATRIVELSGELEFAKQRHERLKANAESEKQRLIRSKLKPKGHFLLKK 126


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,777
Number of Sequences: 53049
Number of extensions: 289679
Number of successful extensions: 980
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)