Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B09f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    27   0.15 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   1.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = +3

Query: 384 CRRKIYHKKCICKVVVNELEIEIKNTVISALL*QKKK 494
           C  ++  ++C+C+ +  +LE+  ++    ++L   KK
Sbjct: 317 CHAEVVARRCLCEYLYKQLELHTEDRAAESILEPAKK 353


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 438 IHLQLLYKYIFYDKFFF 388
           +H   + KYI +D+FFF
Sbjct: 1   MHFNNVIKYINFDRFFF 17


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = -3

Query: 462 QYSLFQFLIHLQLLYKYIFYDKFFFCNIIPFGLS 361
           QY      +H  L  + +  +    C I  FGLS
Sbjct: 749 QYLAEMNYVHRDLAARNVLVNAALVCKIADFGLS 782


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 449 NKEYCYFCLTVTKKKKKNS 505
           NK Y  FC T  +  K+N+
Sbjct: 447 NKNYTKFCSTEKRLTKQNT 465


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,535
Number of Sequences: 438
Number of extensions: 1967
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)