Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335B08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 256 1e-69
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 256 1e-69
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 132 3e-32
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 51 1e-07
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.034
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 30 0.18
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 29 0.56
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 28 0.97
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 1.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 2.2
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 27 2.2
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 2.2
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 3.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 3.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 3.0
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 3.9
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 3.9
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.2
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 5.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 25 6.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 9.0
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 25 9.0
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 25 9.0
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 25 9.0
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 256 bits (627), Expect = 1e-69
Identities = 119/173 (68%), Positives = 138/173 (79%)
Frame = +2
Query: 2 IVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFM 181
IVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+V+E S LSKSPNKHNR+FM
Sbjct: 529 IVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRIFM 588
Query: 182 KAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVD 361
A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N++VD
Sbjct: 589 TAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVD 648
Query: 362 CSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFXIYDVTLHTDAIHRG 520
+K V YLNEIKDSVVA F WA+KEG M EENLR RF I DV LH DAIHRG
Sbjct: 649 QTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRG 701
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 256 bits (627), Expect = 1e-69
Identities = 119/173 (68%), Positives = 138/173 (79%)
Frame = +2
Query: 2 IVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFM 181
IVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+V+E S LSKSPNKHNR+FM
Sbjct: 529 IVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESVSEPSSMTALSKSPNKHNRIFM 588
Query: 182 KAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVD 361
A+PM + L I+ G VNPRDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N++VD
Sbjct: 589 TAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGANVVVD 648
Query: 362 CSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFXIYDVTLHTDAIHRG 520
+K V YLNEIKDSVVA F WA+KEG M EENLR RF I DV LH DAIHRG
Sbjct: 649 QTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRG 701
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 132 bits (319), Expect = 3e-32
Identities = 63/176 (35%), Positives = 99/176 (56%), Gaps = 4/176 (2%)
Frame = +2
Query: 5 VAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMK 184
+ G GE++++ L DL ++ I I+ SDPV + ET + S C S +PNK NR+ M
Sbjct: 642 IFGTGEMYMDCLLYDLRTLYSEIEIRVSDPVARFCETAVDTSSIKCFSDTPNKKNRITMV 701
Query: 185 AQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNILVDC 364
+P+ G+ DI+ G+VN K + + + Y++D+ +R IW FGP+ G NIL D
Sbjct: 702 VEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTNILRDD 761
Query: 365 SKGV----QYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFXIYDVTLHTDAIHRG 520
+ LN +K+ + GFQW +EG + +E +R V F + DV L + I+RG
Sbjct: 762 TLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRG 817
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 50.8 bits (116), Expect = 1e-07
Identities = 25/50 (50%), Positives = 31/50 (62%)
Frame = +2
Query: 2 IVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSK 151
++ AGE+HLE CLKDL E A I I+ S P+V YRET D L +K
Sbjct: 604 VIMCAGEIHLERCLKDLRERFAKIEIQASQPLVPYRETTIATPDLLAKNK 653
Score = 30.7 bits (66), Expect = 0.14
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Frame = +2
Query: 245 DDFKTRARYLTEKYEYDVTEARK----IWCFGPEGTGPNILVDCSKGVQYL--------- 385
+ F R L E+ D+ E + I FGP+ GPNIL D +K ++
Sbjct: 724 EKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKL 783
Query: 386 --NEIKDSVVAGFQWAAKEGVMAEENLRGVRFXIYDVTLHTDA 508
+++ + VV FQ +G + E ++G+ I + D+
Sbjct: 784 IPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDS 826
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.7 bits (71), Expect = 0.034
Identities = 13/42 (30%), Positives = 29/42 (69%)
Frame = +2
Query: 2 IVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEE 127
I++G GELHLE+ ++ + ++ + + P V++RET++++
Sbjct: 516 IISGMGELHLEVYVERMRREYK-VDCETGKPRVAFRETLSKK 556
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 41 LKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 199
+K LEE+ + +K SD V + ++ + P +++FM PMP
Sbjct: 287 VKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTPPMP 339
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 28.7 bits (61), Expect = 0.56
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 38 CLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGL 208
C++DL++ + K+SD Y T+ ++KS KHN+L K +P+P L
Sbjct: 214 CVRDLKKLEKKVK-KRSDLGNKYESTLNS-----LINKSVKKHNKLVKKHKPLPSTL 264
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 519 PLWMASVWSVTS*MXNRTPRKFSSAITPSLAAHWNPATTESLISLRY 379
P W+A V ++ S + P FSS + +L A+ N + + + Y
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 32 EICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 163
E+C +LE+D I +S +S + A++ DQL S + +K
Sbjct: 64 ELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLASSSTISK 107
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 2.2
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 26 HLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDG 205
HL++CL D +E+ + K + E S +L LSK + + + M
Sbjct: 475 HLKLCLSDSQEELLQLNAKLEKANIVIDEL---NSAKLKLSKQVEEESSMKDDLTEMNQR 531
Query: 206 LPEDID--EGRVNPRDDFKTRARYLTEKYEYD 295
L E I+ E VN +T + T K +Y+
Sbjct: 532 LKEQIESYENEVNSEITSRTLKEFETLKTQYE 563
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 2.2
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 218 IDEGRVNPRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPNIL 355
++E + R+ + Y + + VT ++ + FGP GTG +L
Sbjct: 502 LEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 334 LGAKAPNLTGFGNIVFVLFCKIPSAS 257
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 206 LPEDIDEGRVNPRDDFKT 259
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = -2
Query: 208 QTIRHGLSLHEQTVVLVGRL*E 143
+++RH +SL+E+T + +GRL E
Sbjct: 324 ESVRHLISLNEETWIQIGRLAE 345
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 276 QKSTNTMLPKPVRFGALAPRVPAPTSWSIAPKEFSTSMKLRTLLWLDSS 422
++ T T L + GA P +P T WS+A T TL W+ ++
Sbjct: 140 ERKTLTHLRRISLQGADDPEIP--TDWSVAMSPPETEQDASTLFWVPAN 186
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 302 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 391
E + GP G+G ++LVD S+ Q +NE
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -2
Query: 361 IDQDVGAGTLGAKAPNLTGFGNIVFVLFCKIPSASLEVIAG 239
+D+D ++G P+LT +G+ VL +P A+ + +G
Sbjct: 317 LDEDSNDNSMGIIKPHLTFYGHEGPVLCVCVPKATHHIFSG 357
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 517 SMDGISMECYIIDXESNTTQILFSHNSFLSGPLESSHNRVLN 392
++ + + Y++ E + Q + SFL L S HN+V N
Sbjct: 224 TVSNVEVLLYLLQQEESLAQFDLNGKSFLYHMLVSLHNQVTN 265
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 380 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 472
YL+ + +AGFQ G+ ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 219 LMRVA*IPAMTSRLALGILQKSTNTMLPKPVRFGALAPRVPAPTSWSIAPKEFS 380
L RV +P ++S+ L + +P P + AP VP PTS PK S
Sbjct: 1008 LARVPPVPKLSSKAPPVPLPSADAPPIPVP----STAPPVPIPTSTPPVPKSSS 1057
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 107 RETVAEESDQLCLSKSPNKHNRLFMKAQP 193
R T EE + L+KSP+ HNR+ P
Sbjct: 466 RLTDDEEREIRALAKSPDIHNRIIASMAP 494
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 300 PKPVRFGALAPRVPAPTSWSIAPKEFSTSMKLRTLLWLDSSGPL 431
P P + AP VP P S ++ T +L+ + D S P+
Sbjct: 1731 PPPPLPASSAPSVPNPGDRSALLQQIHTGTRLKKTVTTDKSKPI 1774
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 418 ESSHNRVLNFIEVLNSFG 365
ESS N++LN E N FG
Sbjct: 421 ESSENKMLNLFEDYNEFG 438
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 330 GPKHQILRASVTSYSYFS 277
G KH +LRA+ +Y YFS
Sbjct: 318 GHKHLLLRAANIAYHYFS 335
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -3
Query: 348 LGPVPSGPKHQILRASVTSYSYFS 277
L P P G KHQ+L YFS
Sbjct: 230 LHPSPGGLKHQVLNRITVIMIYFS 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,399
Number of Sequences: 5004
Number of extensions: 48536
Number of successful extensions: 165
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -