Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B07f
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   1.5  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   2.0  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   2.6  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    25   3.5  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    25   4.6  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    24   8.0  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    24   8.0  
SPAC1805.07c |dad2|hos2|DASH complex subunit Dad2|Schizosaccharo...    24   8.0  

>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 15  SIDFMVEKLETLTQSELASRLTLNCTPNYVQPHLLSDIPVTIMDVW 152
           +I  ++ +LE   ++    +  ++ TPNY+ P +L  +   + D+W
Sbjct: 756 AIHMLMNQLEK-KENRTFIKKDISGTPNYMAPEILMGVDTQMGDIW 800


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 126 IPVTIMDVWDESALSSHVREDLYKSYPHAKLAHLKSG-GNFPYLSRSDEVNLHL 284
           +PV ++ +  +   +   + ++ KS+P+A L  + S  G+  +L    +VN H+
Sbjct: 393 LPVLVLGIESDGLFTFDEQVEIAKSFPNATLEKIISAEGHDGFLLEFTQVNSHI 446


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +3

Query: 309 GTELSSSYLXLHKMXPSQSPTDSEESPINYFN 404
           G+E    YL L    P++SP  ++  PI+  N
Sbjct: 528 GSEDGKIYLWLFNNAPNESPVSTQSVPISSLN 559


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 36  KLETLTQSELASRLTLNCTPNYVQPHLLSDIPV 134
           +LE L+ + L +  T  C  NY+ P++   IPV
Sbjct: 95  ELELLSDTSLTTGDTAVCNINYLDPNINVAIPV 127


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 27  MVEKLETLTQSELASRLTLNCTPNYVQPHLLSDIPVTIMD 146
           ++E++  LTQS +  +  LN TP+ +   LL ++ +   D
Sbjct: 467 LLERIGELTQSHIVDKSRLNNTPDIL--ILLEEVDILFQD 504


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +3

Query: 261 SDEVNLHLVIHLRQXDGTELSSSYLXLHKMXPSQSPTDSEESPINYFNXS 410
           ++EV   L++ L   + TEL+ S +  +    +    D  E   N++  S
Sbjct: 473 AEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDS 522


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 187 SSRTCELSALSSQTSIIVTGMSLNKCG 107
           S R C  S+ SS ++ + TGMS+   G
Sbjct: 416 SKRCCASSSSSSNSNNLSTGMSMRTLG 442


>SPAC1805.07c |dad2|hos2|DASH complex subunit
           Dad2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 6   MAESIDFMVEKLETLTQSELASRLTLNCTPN 98
           M + I+ +  KLETLT    A    LN  P+
Sbjct: 26  MVQQIETLAAKLETLTDGSEAVATVLNNWPS 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,665
Number of Sequences: 5004
Number of extensions: 26784
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)