Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335B07f
(411 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0036 + 4434003-4434092,4436135-4436233,4437794-4437871,443... 95 1e-20
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 32 0.16
03_05_0429 - 24157060-24157671,24158000-24158468,24158679-241587... 32 0.16
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 31 0.47
02_04_0431 - 22841708-22842571,22842659-22842743,22842796-228428... 30 0.63
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 29 1.1
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408... 29 1.9
12_02_0780 + 23094989-23095380,23096132-23096573,23096687-230973... 27 4.4
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234 27 4.4
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672... 27 4.4
05_06_0243 - 26639497-26641173 27 5.8
>10_02_0036 +
4434003-4434092,4436135-4436233,4437794-4437871,
4438090-4438197,4438534-4438674,4438749-4438997,
4439477-4439521
Length = 269
Score = 95.5 bits (227), Expect = 1e-20
Identities = 46/99 (46%), Positives = 71/99 (71%)
Frame = +3
Query: 6 MAESIDFMVEKLETLTQSELASRLTLNCTPNYVQPHLLSDIPVTIMDVWDESALSSHVRE 185
+A+S+DF+V ++ETL++ +L+SRL LN V +L D +TIMD D SA+ +++
Sbjct: 79 IADSVDFVVSQVETLSRDDLSSRLMLNVNVASVGSLMLPDSLITIMDTNDYSAVPQQLKD 138
Query: 186 DLYKSYPHAKLAHLKSGGNFPYLSRSDEVNLHLVIHLRQ 302
+ + YP A+ A LK+GG+FP+LSR DEVNL+L +HLR+
Sbjct: 139 QVNERYPGARRAVLKTGGDFPFLSRPDEVNLYLQLHLRR 177
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 32.3 bits (70), Expect = 0.16
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 21 DFMVEKLETLTQSELASRLTLNCTPNYVQPHLLSDIPV-TIMDVW 152
DF + K+ LT +LAS + TP+Y+ P LL+DIP T D+W
Sbjct: 147 DFGLAKI--LTSDDLASSVV--GTPSYMCPELLADIPYGTKSDIW 187
>03_05_0429 -
24157060-24157671,24158000-24158468,24158679-24158752,
24159231-24159280,24159368-24159449,24159526-24159575,
24159666-24159708,24159804-24159884,24159988-24160033,
24160151-24160197,24160358-24160423,24160701-24160767,
24160913-24160998
Length = 590
Score = 32.3 bits (70), Expect = 0.16
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +3
Query: 21 DFMVEKLETLTQSELASRLTLNCTPNYVQPHLLSDIPV-TIMDVW 152
DF + K+ LT +LAS + TP+Y+ P LL+DIP T D+W
Sbjct: 147 DFGLAKI--LTSDDLASSVV--GTPSYMCPELLADIPYGTKSDIW 187
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 30.7 bits (66), Expect = 0.47
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +3
Query: 42 ETLTQSELASRLTLNCTPNYVQPHLLSDIPVTI-MDVW 152
+TL + +L S + TPNY+ P LL+DIP D+W
Sbjct: 162 KTLKEDDLTSSVV--GTPNYMCPELLTDIPYGFKSDIW 197
>02_04_0431 -
22841708-22842571,22842659-22842743,22842796-22842869,
22842953-22843002,22843086-22843167,22843941-22843987,
22844089-22844131,22844219-22844299,22844413-22844458,
22844557-22844603,22844709-22844774,22845030-22845096,
22845194-22845279
Length = 545
Score = 30.3 bits (65), Expect = 0.63
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 39 LETLTQSELASRLTLNCTPNYVQPHLLSDIPVTI-MDVW 152
L L +LAS T+ TPNY+ P +L+DIP D+W
Sbjct: 150 LAKLLMEDLAS--TIVGTPNYMCPEILADIPYGYKSDIW 186
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 42 ETLTQSELASRLTLNCTPNYVQPHLLSDIPVTI-MDVW 152
+TL +L S + TPNY+ P LL+DIP D+W
Sbjct: 156 KTLKADDLTSSVV--GTPNYMCPELLADIPYGFKSDIW 191
>07_01_0549 +
4082672-4082731,4083424-4083489,4083628-4083674,
4083757-4083802,4083905-4083985,4084105-4084147,
4084258-4084307,4084392-4084473,4084538-4084587,
4084687-4084760,4084870-4084921,4085034-4085459,
4085816-4086403
Length = 554
Score = 28.7 bits (61), Expect = 1.9
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 21 DFMVEKLETLTQSELASRLTLNCTPNYVQPHLLSDIPV-TIMDVW 152
DF + K+ LT +L S + TP+Y+ P LL+DIP + D+W
Sbjct: 116 DFGLAKV--LTSDDLTSSVV--GTPSYMCPELLADIPYGSKSDIW 156
>12_02_0780 +
23094989-23095380,23096132-23096573,23096687-23097311,
23098240-23098280,23098371-23098439,23098779-23098879,
23099422-23099500,23099946-23100044,23100123-23100191,
23100283-23100332,23100416-23100497,23100997-23101091,
23101263-23101395
Length = 758
Score = 27.5 bits (58), Expect = 4.4
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 307 MVQSFRRRISXCTKXRHPNL 366
++Q+FR+ +S K RHPN+
Sbjct: 516 VIQTFRQEVSLMKKLRHPNI 535
>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
Length = 856
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 3 RMAESIDFMVEKLETLTQSELASRLTLNCTPNYVQPHLL 119
++ ESI F ++K + L ++ L+ N PNY++ LL
Sbjct: 400 KVKESIGFALDKNQNLEGMKIILSLSFNNLPNYLKTCLL 438
>02_02_0096 -
6727844-6727957,6728149-6728247,6728332-6728410,
6728534-6728634,6728740-6728808,6729180-6729220,
6729992-6730836,6730924-6731027,6731479-6732354
Length = 775
Score = 27.5 bits (58), Expect = 4.4
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +3
Query: 162 ALSSHVREDLYKSYPHAKLAHLKSGGNFPYLSRSDEVNLHLV 287
AL+S ED++ + K + + GG P+L + ++ ++LV
Sbjct: 400 ALASSQLEDIFHTENPLKQSTISDGGEIPHLMKVNDAPMYLV 441
>05_06_0243 - 26639497-26641173
Length = 558
Score = 27.1 bits (57), Expect = 5.8
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 132 VTIMDVWDESALSSHVREDLYKSYPHAKLAHLKS 233
+T+ D+ + A +S+ ED++KS P ++ HLKS
Sbjct: 267 MTLQDLRNSVAKASY--EDVFKSCPQLQVLHLKS 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,037,076
Number of Sequences: 37544
Number of extensions: 171062
Number of successful extensions: 372
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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