Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335B07f
(411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039720-1|AAB96694.1| 437|Caenorhabditis elegans Hypothetical ... 31 0.33
AF016437-3|AAB65885.2| 405|Caenorhabditis elegans Hypothetical ... 29 0.99
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 27 5.3
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 27 5.3
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 27 5.3
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 27 7.0
U56964-4|AAB54030.1| 536|Caenorhabditis elegans Hypothetical pr... 26 9.2
U56964-3|AAL65786.1| 522|Caenorhabditis elegans Hypothetical pr... 26 9.2
>AF039720-1|AAB96694.1| 437|Caenorhabditis elegans Hypothetical
protein F33D11.5 protein.
Length = 437
Score = 31.1 bits (67), Expect = 0.33
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +3
Query: 117 LSDIPVTIMDVWDESALSSHVREDLYKSYPHA--KLAHLKSGGNFPYLSRSDEVNLHLVI 290
L IP+ ++ D SH+ +LY Y KL +K+ + +R ++ LH
Sbjct: 99 LVGIPMMVLAAVDFGRFLSHIVLELYSKYLDLVHKLKIMKTVILERHRARDEKRRLHAFK 158
Query: 291 HLRQXDGTELSSSYLXLHKMXPSQSPTDSEESP 389
L Q G+ +S + TDS+E P
Sbjct: 159 RLVQDTGSTISECTTQKDVQLEEEQTTDSDEMP 191
>AF016437-3|AAB65885.2| 405|Caenorhabditis elegans Hypothetical
protein F13H6.4 protein.
Length = 405
Score = 29.5 bits (63), Expect = 0.99
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +3
Query: 144 DVWDESALSSHVREDLYKSYPHAKLAHLKSGGNFPYLSRSDEVNL 278
++W++ L++ R SYP ++ + SGG P+L + +E +L
Sbjct: 347 EIWEKFNLNNPERH-FRISYPKCEMRDIFSGGRMPFLEKLEEKSL 390
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 225 LKSGGNFPYLSRSDEVNLHLVIHL-RQXDGTELSSSYLXLHKMXPSQSPTDSEESPIN 395
LK+GG+ L++ E LH+ R + T L L L K +S ++ S IN
Sbjct: 399 LKNGGSVTMLTKQTETPLHVAARAGRAVNCTFLMKEMLDLEKGDDGESTIRADRSIIN 456
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 225 LKSGGNFPYLSRSDEVNLHLVIHL-RQXDGTELSSSYLXLHKMXPSQSPTDSEESPIN 395
LK+GG+ L++ E LH+ R + T L L L K +S ++ S IN
Sbjct: 399 LKNGGSVTMLTKQTETPLHVAARAGRAVNCTFLMKEMLDLEKGDDGESTIRADRSIIN 456
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 27.1 bits (57), Expect = 5.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 225 LKSGGNFPYLSRSDEVNLHLVIHL-RQXDGTELSSSYLXLHKMXPSQSPTDSEESPIN 395
LK+GG+ L++ E LH+ R + T L L L K +S ++ S IN
Sbjct: 399 LKNGGSVTMLTKQTETPLHVAARAGRAVNCTFLMKEMLDLEKGDDGESTIRADRSIIN 456
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 15 SIDFMVEKLETLTQSELASRLTLNCTPNYVQ 107
+++ VE LET+TQS+++S T+ P V+
Sbjct: 2212 ALESAVEALETMTQSDVSSLKTMRFPPYAVR 2242
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
B0365.7 protein.
Length = 2769
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 15 SIDFMVEKLETLTQSELASRLTLNCTPNYVQ 107
+++ VE LET+TQS+++S T+ P V+
Sbjct: 2212 ALESAVEALETMTQSDVSSLKTMRFPPYAVR 2242
>U56964-4|AAB54030.1| 536|Caenorhabditis elegans Hypothetical
protein F52E4.1a protein.
Length = 536
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +3
Query: 168 SSHVREDLYKSYPHAKLAHLKSGGNFPYLSRSDEVNLHLVIHLRQXDGTELSSS 329
S H+R D+ ++P A++A + + G L R+D+ H V H + + TEL S+
Sbjct: 440 SKHLRGDINYAWPTAEVAVMGAKGAVSILFRNDKE--HAVQH--EEEYTELFSN 489
>U56964-3|AAL65786.1| 522|Caenorhabditis elegans Hypothetical
protein F52E4.1b protein.
Length = 522
Score = 26.2 bits (55), Expect = 9.2
Identities = 18/54 (33%), Positives = 31/54 (57%)
Frame = +3
Query: 168 SSHVREDLYKSYPHAKLAHLKSGGNFPYLSRSDEVNLHLVIHLRQXDGTELSSS 329
S H+R D+ ++P A++A + + G L R+D+ H V H + + TEL S+
Sbjct: 426 SKHLRGDINYAWPTAEVAVMGAKGAVSILFRNDKE--HAVQH--EEEYTELFSN 475
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,617,777
Number of Sequences: 27780
Number of extensions: 152756
Number of successful extensions: 419
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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