Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335B04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0128 + 956953-957166,957657-958309 31 0.74
07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967 30 1.3
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344... 30 1.3
08_01_0898 - 8856146-8856566,8857607-8857811,8858776-8858820,886... 29 2.3
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 29 2.3
11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230... 28 4.0
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409... 28 5.2
05_05_0182 - 23045837-23046026,23046112-23046306,23046852-230470... 28 5.2
12_01_0258 - 1900564-1901101,1901838-1902004 27 6.9
05_01_0353 + 2765112-2765156,2765432-2766250 27 6.9
05_01_0352 - 2759633-2760166,2760181-2760228,2760843-2760950 27 6.9
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428... 27 6.9
11_01_0260 - 1985258-1985794,1986874-1986990 27 9.1
10_06_0078 + 10416950-10417174,10417595-10417679,10417782-104179... 27 9.1
07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856 27 9.1
07_03_0712 - 20878272-20879633 27 9.1
04_04_0558 - 26231752-26231837,26231929-26231974,26232059-262321... 27 9.1
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 27 9.1
>07_01_0128 + 956953-957166,957657-958309
Length = 288
Score = 30.7 bits (66), Expect = 0.74
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 52 TCPQCRVTDTHFVKPLTYC-FTKRVYPLFQQW 144
TCP CRVT L +C +T+R++ L W
Sbjct: 211 TCPLCRVTSESASHLLVHCRYTRRIWSLTAAW 242
>07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967
Length = 404
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 260 VVNTSMASRAPEPAEDHTNKYLNPTLASIT--ESLSLLGLTPETLA 391
VV+ S A R EDH+ + LNPT SI+ S G P T+A
Sbjct: 101 VVSGSSADRVLVAGEDHSVRVLNPTTGSISILPSHRCGGADPSTIA 146
>04_04_0200 -
23529497-23531938,23532586-23533720,23534272-23534463,
23535527-23535570
Length = 1270
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +2
Query: 155 SAVPGTSPGTSPASAD 202
SAVP TSPG SPAS D
Sbjct: 50 SAVPATSPGESPASQD 65
>08_01_0898 -
8856146-8856566,8857607-8857811,8858776-8858820,
8860204-8860608,8861175-8861298
Length = 399
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +1
Query: 19 RLNYSDYSHPVTCPQCRVTDTHFVKPLTYC-FTKRVYPLFQQW 144
RL ++ + V CP CR V L +C +KR++ + W
Sbjct: 266 RLQARNWQNQVICPLCRAEPETAVHLLAHCRLSKRIWDAVRDW 308
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 370 FNSGNAGHELGRVTC*SLLGVAQTETSRAANDAVGGVXEXPRR 498
+++G+ GH R + SL VA+ E + ND V E RR
Sbjct: 284 YSAGSGGHRSRRSSIGSLSSVAEQENAVIDNDVVASTSEIYRR 326
>11_06_0495 -
24319531-24320831,24320923-24321109,24322919-24323062,
24324467-24324469
Length = 544
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 336 RVGLRYLLVWSSAGSGAREAILVLT 262
RVG R LL+WS+AG A L LT
Sbjct: 402 RVGRRPLLLWSAAGMAVALASLALT 426
>05_07_0311 -
29139883-29140359,29140641-29140788,29140883-29140959,
29141227-29141387,29141785-29142803,29142905-29142996,
29143117-29143256,29143397-29143574
Length = 763
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 107 ASPNGFTHYSSSGHKQSAVPGTSPGTSPASADVWN 211
+SP T + S+ S+V + PGTSP SA N
Sbjct: 214 SSPESETAFGSTDVGTSSVSSSDPGTSPYSASETN 248
>05_05_0182 -
23045837-23046026,23046112-23046306,23046852-23047094,
23047456-23047496,23047703-23047813,23047965-23048216,
23048508-23048657,23048760-23048778,23049129-23049688
Length = 586
Score = 27.9 bits (59), Expect = 5.2
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 202 RVEHCPVAPSPRIS 243
R HCPVAP PR+S
Sbjct: 176 RERHCPVAPRPRLS 189
>12_01_0258 - 1900564-1901101,1901838-1902004
Length = 234
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 119 GFTHYSSSGHKQSAVPGTSPGTSPASADVW 208
G T + + H PG G SPASA W
Sbjct: 50 GGTREAGADHVPEPEPGVGNGHSPASASAW 79
>05_01_0353 + 2765112-2765156,2765432-2766250
Length = 287
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 178 RHLPCFG*RVEHCPVAPSPRISPRVTSSRQH 270
RH P FG +V H P P P + +T R H
Sbjct: 135 RHAPFFGTKVSHYPPCPRPDL---ITGLRAH 162
>05_01_0352 - 2759633-2760166,2760181-2760228,2760843-2760950
Length = 229
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 178 RHLPCFG*RVEHCPVAPSPRISPRVTSSRQH 270
RH P FG +V H P P P + +T R H
Sbjct: 151 RHAPFFGTKVSHYPPCPRPDL---ITGLRAH 178
>01_06_1797 +
39941482-39941608,39942302-39942497,39942601-39942828,
39943157-39943388,39943476-39943583,39943696-39943968,
39944261-39944545
Length = 482
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 117 FGEAVSEWLHEVRVSNSALRARHWV 43
F A W HEV +S L+ R+W+
Sbjct: 287 FKTADGSWSHEVAISIKPLKVRNWI 311
>11_01_0260 - 1985258-1985794,1986874-1986990
Length = 217
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 134 SSSGHKQSAVPGTSPGTSPASADVW 208
+++ H PG S G SPASA W
Sbjct: 39 ANADHVPEPEPGVSNGHSPASASAW 63
>10_06_0078 +
10416950-10417174,10417595-10417679,10417782-10417900,
10418200-10418287,10419400-10419452,10419876-10420015,
10420094-10420166,10420243-10420311,10420632-10420844,
10422304-10422498,10422581-10422658,10423456-10423590
Length = 490
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 371 LTPETLAMSXGESLADRYXASLRPKPVELPTMQXGGXG 484
L P T + G +LA + +S RP+ ELP + GG G
Sbjct: 15 LNPST---NLGLALASSFSSSSRPEQPELPGARGGGGG 49
>07_03_1154 - 24402550-24405073,24405909-24406330,24407318-24408856
Length = 1494
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 214 CPVAPSPRISPRVTSSRQHEYGFSCPGTC 300
C V P ++ +V +H YG S G C
Sbjct: 195 CSVCKLPDVAEKVIKQAEHRYGVSRTGRC 223
>07_03_0712 - 20878272-20879633
Length = 453
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 131 YSSSGHKQSAVPGTSPGTSPASADVWN 211
+ SS Q VPG + G S AS+D WN
Sbjct: 194 FGSSPADQVRVPGIAFGCSNASSDDWN 220
>04_04_0558 -
26231752-26231837,26231929-26231974,26232059-26232139,
26232250-26232336,26232459-26232548,26232650-26232841,
26232973-26233179
Length = 262
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 226 PSPRISPRVTSSRQHEYGFSCPGTC*RPHQQIP 324
P+P I+P++ S R H G C G H Q P
Sbjct: 15 PNPPITPQLPSCRTHSAGARCRGFA-AAHSQPP 46
>02_05_0490 +
29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 214 CPVAPSPRISPRVTSS 261
CP+ PSP + P VTSS
Sbjct: 72 CPLTPSPSLLPAVTSS 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,595,818
Number of Sequences: 37544
Number of extensions: 274953
Number of successful extensions: 845
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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