Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   5.8  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    21   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 329 PTLASITESLSLLGLTPETL 388
           PT A++T++L  L  +P+TL
Sbjct: 883 PTFANLTQTLDKLIRSPDTL 902


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 140 SGHKQSAVPGTSPGTSPA 193
           SG  Q +  G  PG +PA
Sbjct: 374 SGRSQKSTTGPPPGPTPA 391


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 323 LNPTLASITESLSLLGLTPETL 388
           L+P L+S   ++ +  LTP TL
Sbjct: 2   LSPFLSSSVSTVIVTALTPSTL 23


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 235 RISPRVTSSRQHEYGFSCPGTC*RPHQQIPQPDSG 339
           +++P +  +R+     +CP T   P    PQP +G
Sbjct: 196 KVAPILVRARETPNYTACPPTLACPLNPNPQPLTG 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,467
Number of Sequences: 438
Number of extensions: 2557
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)