Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B03f
         (439 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL353779-1|CAI20975.1|  250|Homo sapiens chromosome 1 open readi...    29   5.3  
AF005081-1|AAB83961.1|  112|Homo sapiens skin-specific protein p...    29   5.3  
BC047932-1|AAH47932.1|  437|Homo sapiens vacuolar protein sortin...    29   9.3  
AK093285-1|BAC04121.1|  797|Homo sapiens protein ( Homo sapiens ...    29   9.3  
AF282903-1|AAG01470.1|  437|Homo sapiens vacuolar protein sortin...    29   9.3  
AF255952-1|AAK52408.1|  437|Homo sapiens vacuolar protein sortin...    29   9.3  
AF159063-1|AAD49227.1|  437|Homo sapiens SKD1-homolog protein.         29   9.3  
AF155740-1|AAD42971.1|  432|Homo sapiens vacuolar sorting protei...    29   9.3  
AF132747-1|AAL75948.1|  437|Homo sapiens SKD2 protein protein.         29   9.3  
AF112215-1|AAF17203.1|  437|Homo sapiens SKD1 protein protein.         29   9.3  

>AL353779-1|CAI20975.1|  250|Homo sapiens chromosome 1 open reading
           frame 68 protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 328 QGRTPCSTELIQPFS*ALLSQYFLKTSSSAPFGLASSISVFRTFKSTSPLRQF 170
           QG +PC +  +Q  +    SQY +    SAP   +      RTF   SPLR++
Sbjct: 135 QGASPCQSYYVQAPASGSTSQYCVTDPCSAPCSTSYCCLAPRTF-GVSPLRRW 186


>AF005081-1|AAB83961.1|  112|Homo sapiens skin-specific protein
           protein.
          Length = 112

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 328 QGRTPCSTELIQPFS*ALLSQYFLKTSSSAPFGLASSISVFRTFKSTSPLRQF 170
           QG +PC +  +Q  +    SQY +    SAP   +      RTF   SPLR++
Sbjct: 5   QGASPCQSYYVQAPASGSTSQYCVTDPCSAPCSTSYCCLAPRTF-GVSPLRRW 56


>BC047932-1|AAH47932.1|  437|Homo sapiens vacuolar protein sorting 4
           homolog A (S. cerevisiae) protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 111 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLK 290
           TK   EDK    E ALR + + ++    L+ +K E    K   ++     +Y D++ +LK
Sbjct: 14  TKATEEDKAKNYEEALRLYQHAVEYF--LHAIKYEAHSDKAKESIRAKCVQYLDRAEKLK 71

Query: 291 GCI-SSVLQGVRPCVGNDYANHINDAQN 371
             + S    G +P   N      +D+ +
Sbjct: 72  DYLRSKEKHGKKPVKENQSEGKGSDSDS 99


>AK093285-1|BAC04121.1|  797|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35966 fis, clone TESTI2012628, moderately
           similar to Mus musculus STAP mRNA for sperm tail
           associated protein. ).
          Length = 797

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 18/64 (28%), Positives = 23/64 (35%)
 Frame = +3

Query: 105 QCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQ 284
           QC     E  V E +        C     ++  LK  +EEAK    L       C + A 
Sbjct: 435 QCMATELEMTVKEAKQDKSKEAECKALQAEVQKLKNSLEEAKQQERLAAQQAAQCKEEAA 494

Query: 285 LKGC 296
           L GC
Sbjct: 495 LAGC 498


>AF282903-1|AAG01470.1|  437|Homo sapiens vacuolar protein sorting
           factor 4A protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 111 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLK 290
           TK   EDK    E ALR + + ++    L+ +K E    K   ++     +Y D++ +LK
Sbjct: 14  TKATEEDKAKNYEEALRLYQHAVEYF--LHAIKYEAHSDKAKESIRAKCVQYLDRAEKLK 71

Query: 291 GCI-SSVLQGVRPCVGNDYANHINDAQN 371
             + S    G +P   N      +D+ +
Sbjct: 72  DYLRSKEKHGKKPVKENQSEGKGSDSDS 99


>AF255952-1|AAK52408.1|  437|Homo sapiens vacuolar protein sorting
           VPS4-1 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 111 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLK 290
           TK   EDK    E ALR + + ++    L+ +K E    K   ++     +Y D++ +LK
Sbjct: 14  TKATEEDKAKNYEEALRLYQHAVEYF--LHAIKYEAHSDKAKESIRAKCVQYLDRAEKLK 71

Query: 291 GCI-SSVLQGVRPCVGNDYANHINDAQN 371
             + S    G +P   N      +D+ +
Sbjct: 72  DYLRSKEKHGKKPVKENQSEGKGSDSDS 99


>AF159063-1|AAD49227.1|  437|Homo sapiens SKD1-homolog protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 111 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLK 290
           TK   EDK    E ALR + + ++    L+ +K E    K   ++     +Y D++ +LK
Sbjct: 14  TKATEEDKAKNYEEALRLYQHAVEYF--LHAIKYEAHSDKAKESIRAKCVQYLDRAEKLK 71

Query: 291 GCI-SSVLQGVRPCVGNDYANHINDAQN 371
             + S    G +P   N      +D+ +
Sbjct: 72  DYLRSKEKHGKKPVKENQSEGKGSDSDS 99


>AF155740-1|AAD42971.1|  432|Homo sapiens vacuolar sorting protein 4
           protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
 Frame = +3

Query: 111 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLK 290
           TK   EDK    E ALR + + ++    L+ +K E    K   ++     +Y D++ +LK
Sbjct: 9   TKATEEDKAKNYEEALRLYQHAVEYF--LHAIKYEAHSDKAKESIRAKCVQYLDRAEKLK 66

Query: 291 GCI-SSVLQGVRPCVGNDYANHINDAQN 371
             + S    G +P   N      +D+ +
Sbjct: 67  DYLRSKEKHGKKPVKENQSEGKGSDSDS 94


>AF132747-1|AAL75948.1|  437|Homo sapiens SKD2 protein protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 111 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLK 290
           TK   EDK    E ALR + + ++    L+ +K E    K   ++     +Y D++ +LK
Sbjct: 14  TKATEEDKAKNYEEALRLYQHAVEYF--LHAIKYEAHSDKAKESIRAKCVQYLDRAEKLK 71

Query: 291 GCISSVLQ-GVRPCVGNDYANHINDAQN 371
             + S  + G +P   N      +D+ +
Sbjct: 72  DYLRSKEEHGKKPVKENQSEGKGSDSDS 99


>AF112215-1|AAF17203.1|  437|Homo sapiens SKD1 protein protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = +3

Query: 111 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCDKSAQLK 290
           TK   EDK    E ALR + + ++    L+ +K E    K   ++     +Y D++ +LK
Sbjct: 14  TKATEEDKAKNYEEALRLYQHAVEYF--LHAIKYEAHSDKAKESIRAKCVQYLDRAEKLK 71

Query: 291 GCISSVLQ-GVRPCVGNDYANHINDAQN 371
             + S  + G +P   N      +D+ +
Sbjct: 72  DYLRSKEEHGKKPVKENQSEGKGSDSDS 99


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,541,091
Number of Sequences: 237096
Number of extensions: 1165471
Number of successful extensions: 2658
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2658
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)