Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B03f
         (439 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical pr...    30   0.64 
L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical pr...    30   0.64 
Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr...    29   2.0  
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.      29   2.0  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    28   3.4  
AF016427-2|AAB65352.1|   54|Caenorhabditis elegans Hypothetical ...    27   4.5  
U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mito...    27   6.0  
AC006708-1|AAL77186.1|  129|Caenorhabditis elegans Hypothetical ...    27   6.0  
Z68114-2|CAA92158.1|  463|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>L23647-8|AAK29993.1|   54|Caenorhabditis elegans Hypothetical
           protein ZC262.5 protein.
          Length = 54

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 51  AAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRT 164
           AAG+    +SQI A V  QCTK  A  K P  +A L+T
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41


>L07144-2|AAK21439.1|   54|Caenorhabditis elegans Hypothetical
           protein R05D3.6 protein.
          Length = 54

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +3

Query: 51  AAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRT 164
           AAG+    +SQI A V  QCTK  A  K P  +A L+T
Sbjct: 6   AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41


>Z99280-1|CAB16499.1|  225|Caenorhabditis elegans Hypothetical
           protein Y57G11B.5 protein.
          Length = 225

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 21/90 (23%), Positives = 37/90 (41%)
 Frame = +3

Query: 21  MWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLN 200
           M+K+++ +   A  +A   S +T  +        AED  P   A  R F  C K + + +
Sbjct: 1   MFKSLVFSALLAYAVAAPMSSMTTAIDRIDQIFQAEDSTPACNAETRRFNACFKDINEKS 60

Query: 201 VLKTEIEEAKPNGALDEVFKKYCDKSAQLK 290
            L+   ++     +  EV +   D    LK
Sbjct: 61  RLEM-FQDVTKFPSKSEVLESVADIRKALK 89


>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 339 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIA 437
           D   ++ DA N T +LID    K+GD +A+ +A
Sbjct: 62  DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVA 94


>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
           protein ZK520.3a protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 339 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIA 437
           D   ++ DA N T +LID    K+GD +A+ +A
Sbjct: 62  DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVA 94


>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
          Length = 1383

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 339 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIA 437
           D   ++ DA N T +LID    K+GD +A+ +A
Sbjct: 62  DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVA 94


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 138 PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 236
           PE E  +RT G+   G++D+N  +   + A+PN
Sbjct: 64  PEFEVEIRTNGHIYAGILDINGAEPGDKGAEPN 96


>AF016427-2|AAB65352.1|   54|Caenorhabditis elegans Hypothetical
           protein F32D1.2 protein.
          Length = 54

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +3

Query: 51  AAGVLADDFSQITAVVTSQCTK---NNAEDKVPEVEAALRTFGN 173
           AAG+    +SQI A +T +CTK     A  K PE    + T+ N
Sbjct: 6   AAGLNYVRYSQIAAEITRKCTKQVGGKAAVKKPEATLKITTWEN 49


>U40029-7|AAA81127.1|  645|Caenorhabditis elegans Yeast scc (mitotic
           condensin subunit)homolog protein 1 protein.
          Length = 645

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 138 PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEV 254
           P+V+ ALRT G+ L G+V +   KT    A  N A  ++
Sbjct: 47  PKVKMALRTVGHLLLGIVRIYSKKTRYLLADTNEAYQKM 85


>AC006708-1|AAL77186.1|  129|Caenorhabditis elegans Hypothetical
           protein Y110A7A.20 protein.
          Length = 129

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +3

Query: 54  AGVLADDFSQITAVVTSQCTK-NNAEDKVPEVEAALRTFGNCLKGLVD-----LNVLKTE 215
           AG+  DDF+++  +         +A+DK  E    L+ F     GL+D      NV++TE
Sbjct: 9   AGLFVDDFNRLRLIDPDVAELLQSAQDKSSEFNDQLKNFQTTTGGLIDSIEEFANVVETE 68


>Z68114-2|CAA92158.1|  463|Caenorhabditis elegans Hypothetical
           protein F17A2.3 protein.
          Length = 463

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 117 NNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEVFKKYCD 272
           N    K+PE+EA   T          +NV  T+I+ +  N +LD   K+Y D
Sbjct: 145 NPMNTKIPEIEAFHET----------INVANTDIQTSTKNTSLDGKIKQYSD 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,980,615
Number of Sequences: 27780
Number of extensions: 194520
Number of successful extensions: 575
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)