Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B02f
         (362 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    22   2.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   2.6  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   3.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   3.4  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    20   7.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 318 DPXIQQDMKHWPF 356
           DP + +D +HW F
Sbjct: 855 DPAVYEDWRHWKF 867


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 61 FHNKQYITRRKTFQFA 14
          FH  +Y+TRR+  + A
Sbjct: 27 FHYNRYLTRRRRIEIA 42


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 61  FHNKQYITRRKTFQFA 14
           FH  +Y+TRR+  + A
Sbjct: 289 FHYNRYLTRRRRIEIA 304


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -2

Query: 61 FHNKQYITRRKTFQFA 14
          FH   Y+TRR+  + A
Sbjct: 27 FHYNHYLTRRRRIEIA 42


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 61 FHNKQYITRRKTFQFA 14
          FH  +Y+TRR+  + A
Sbjct: 27 FHFNRYLTRRRRIEIA 42


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 22  EKFFDELYIVYCERSIYSN*YSKCQLSELIWEQH 123
           +KF ++ Y+   ER+ +S+     +    IW Q+
Sbjct: 26  KKFREKQYLTIAERAEFSSSLHLTETQVKIWFQN 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,033
Number of Sequences: 438
Number of extensions: 2181
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)