Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335B01f
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    27   1.2  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   1.2  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   3.8  
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom...    25   6.6  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.7  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   8.7  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 68  RLLQEGVDPKELDNMTKQFGFPVGAATLADEVGI 169
           R L   ++P E  N T  +G P   A L D+V +
Sbjct: 711 RFLLSRLNPSETHNTTSMYGAPPAHAILTDDVSL 744


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 285 DLRPMYPACTKSCMIPKFPPLMRSPKALARSTAM*EPTSI 166
           DL P +PA  K    PK P   ++PK   R+  +  P S+
Sbjct: 78  DLYPNFPAQLKENKKPKLPTTPQTPKTPKRTIQIVTPKSL 117


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -2

Query: 476 CVEFFLPMKXCFHYKSGNHSQLLVFNSISTTRF*CILVFQDFNSTMV 336
           C EFF  +  C    +    + L++N+ S      + V +DF  T++
Sbjct: 693 CFEFFKALALCHSVVTDVQDETLIYNAQSPDEEALVKVARDFGFTLL 739


>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = +3

Query: 15  GLVFTP-----HVSFLLCLVKQ*DCYKRVSILKN 101
           G++FTP     H SF + L K+ D Y  + ++KN
Sbjct: 87  GILFTPFEKGGHTSFNVALRKELDIYASLVLIKN 120


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 240 PKFPPLMRSPKALARSTAM*EPTSIPTSSANVAAPTGKPNC 118
           PK  P +    A        +PTS+  +    AA +G PNC
Sbjct: 873 PKLIPYISKSYAFLAYLYQSKPTSVLDTIIKRAAESGDPNC 913


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 497 QHHLQGGCVEFFLPMKXCFHYKSGNHSQL 411
           QHHL G C+        C   +S ++++L
Sbjct: 531 QHHLYGWCLRLTRTEAGCLRGRSSHYTEL 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,996
Number of Sequences: 5004
Number of extensions: 42862
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)