Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335B01f
(510 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1005 + 33723743-33723946,33724035-33724256,33724789-337249... 47 1e-05
02_02_0418 + 10000744-10000840,10000952-10001023,10001786-100018... 43 2e-04
01_03_0216 + 13870364-13870472,13871406-13871477,13871603-138716... 42 3e-04
05_01_0400 - 3159370-3159385,3159599-3159703,3159972-3160006,316... 42 4e-04
05_04_0012 + 17145112-17145205,17145681-17145752,17145832-171459... 38 0.005
02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545 32 0.31
11_06_0198 - 21158350-21159528 29 2.2
11_01_0734 - 6078023-6078203,6078645-6078866,6079323-6079390,607... 29 2.9
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975... 28 3.8
01_01_0101 - 766382-767487,767599-767756,767900-768615 28 5.0
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 27 6.6
02_04_0508 - 23550785-23551219,23551717-23552670 27 6.6
>01_06_1005 +
33723743-33723946,33724035-33724256,33724789-33724901,
33725581-33725950
Length = 302
Score = 46.8 bits (106), Expect = 1e-05
Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Frame = +2
Query: 11 DGPGFYTTRILSTMLSEAVRLLQEGVDPKE-LD-NMTKQFGFPVGAATLADEVGIDVGSH 184
D PGF RIL M++EA L GV KE +D M P+G LAD +G+DV
Sbjct: 190 DYPGFIVNRILMPMINEAFWALYTGVATKEDIDTGMKLGTNHPMGPLQLADFIGLDVCLS 249
Query: 185 IAVDLAKAFGDRISGGNLGIMQDLVQAGYMGRKSG 289
+ L GD ++ V AG +G+K G
Sbjct: 250 VLRVLHNGLGDS-KYSPCPLLVQYVDAGRLGKKRG 283
>02_02_0418 +
10000744-10000840,10000952-10001023,10001786-10001848,
10001952-10002008,10002159-10002226,10002327-10002408,
10002517-10002572,10002934-10003236,10003638-10003724,
10004454-10004628,10004813-10004934,10005171-10005334,
10006201-10006455,10006979-10007100,10007220-10007341,
10007452-10007600,10007649-10007652
Length = 665
Score = 42.7 bits (96), Expect = 2e-04
Identities = 29/95 (30%), Positives = 41/95 (43%)
Frame = +2
Query: 5 VGDGPGFYTTRILSTMLSEAVRLLQEGVDPKELDNMTKQFGFPVGAATLADEVGIDVGSH 184
VG+ GF R + L+ G+D +D + FG P+G L D G V
Sbjct: 487 VGNCTGFAVNRTFFPYTQGSHLLVSIGIDVFRIDRVISSFGMPMGPFQLQDLAGYGVALA 546
Query: 185 IAVDLAKAFGDRISGGNLGIMQDLVQAGYMGRKSG 289
+ A AFG R NL + +VQ G G+ +G
Sbjct: 547 VKDIYAAAFGTRNLDSNL--VDLMVQNGRQGKSNG 579
>01_03_0216 +
13870364-13870472,13871406-13871477,13871603-13871668,
13871767-13871823,13871917-13871984,13872068-13872149,
13872445-13872500,13872645-13872947,13873042-13873128,
13873199-13873373,13873481-13873602,13873689-13873852,
13873925-13874179,13874312-13874433,13874542-13874663,
13875111-13875259,13875346-13875484,13875715-13875750
Length = 727
Score = 41.9 bits (94), Expect = 3e-04
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +2
Query: 5 VGDGPGFYTTRILSTMLSEAVRLLQEGVDPKELDNMTKQFGFPVGAATLADEVGIDVGSH 184
VG+ GF R+ A+ + G+D ++D +FG P+G LAD VG V +
Sbjct: 492 VGNCTGFAVNRMFFPYTQSALLFVDLGMDVYKIDRACTKFGMPMGPFRLADLVGFGVAAA 551
Query: 185 IAVDLAKAFGDRISGGNL-GIMQDLVQAGYMGRKSGXRF 298
+ + F +R+ L +M + + G RK ++
Sbjct: 552 TGMQYLENFPERVYKSMLIPLMMEDKRTGEASRKGFYKY 590
>05_01_0400 -
3159370-3159385,3159599-3159703,3159972-3160006,
3160134-3160272,3160457-3160605,3161052-3161173,
3161296-3161417,3161779-3162033,3162108-3162271,
3162311-3162489,3162593-3162767,3162916-3163002,
3163144-3163446,3163539-3163594,3163813-3163894,
3163972-3164039,3164779-3164835,3164926-3164991,
3165121-3165192,3167363-3167459
Length = 782
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 5 VGDGPGFYTTRILSTMLSEAVRLLQEGVDPKELDNMTKQFGFPVGAATLADEVGIDV 175
VG+ GF R+ S S A+ L+ G+D ++D + +FG P+G L D VG V
Sbjct: 507 VGNCTGFAVNRMFSPYTSIALLLVDRGMDVYKIDQVCTEFGMPMGPFRLLDLVGFGV 563
>05_04_0012 +
17145112-17145205,17145681-17145752,17145832-17145911,
17146059-17146175,17146282-17146363,17147086-17147141,
17147258-17147560,17147658-17147744,17148118-17148292,
17148370-17148491,17149028-17149191,17149277-17149531,
17150419-17150540,17150656-17150777,17151302-17151450,
17151565-17151703,17151831-17151866
Length = 724
Score = 37.9 bits (84), Expect = 0.005
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 5 VGDGPGFYTTRILSTMLSEAVRLLQEGVDPKELDNMTKQFGFPVGAATLADEVGIDV 175
VG+ GF R+ A L+ G+D +D++ +FG P+G LAD VG V
Sbjct: 489 VGNCTGFAVNRMFFPFTQVAYFLVDYGLDVYHIDHVITKFGMPMGPFRLADLVGFGV 545
>02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545
Length = 358
Score = 31.9 bits (69), Expect = 0.31
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -1
Query: 309 HTHRNLXPDLRPMYPACTKSCMIP-----KFPPLMRSPKALARSTAM*EPTSIPTSSANV 145
H H++ P P+ PA SC +P + P+ S +A + A P S+P+ S V
Sbjct: 198 HNHQDPVPADPPVVPA---SCPVPANAATRQEPIKSSTRAWSPDDAF-RPQSLPSLSKQV 253
Query: 144 AAPTGKPNCFV 112
+ P NC+V
Sbjct: 254 SFPASMGNCWV 264
>11_06_0198 - 21158350-21159528
Length = 392
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Frame = -2
Query: 221 CDHQRPWLDPQRC--ESRHRYQ 162
C+HQ+ W + QRC + RHR Q
Sbjct: 133 CEHQQDWWEKQRCLMDCRHRRQ 154
>11_01_0734 -
6078023-6078203,6078645-6078866,6079323-6079390,
6079919-6079981,6095129-6095782
Length = 395
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -1
Query: 246 MIPKFPPLMRSPKALARSTAM*EPTSIPTSSANVAAPTGKPN 121
+ P + PL+ + + + +S + P++ PT+ A+ AP P+
Sbjct: 172 VFPNYQPLITNNQPVVQSIPLNAPSAQPTAPASTPAPAAPPS 213
>03_02_0600 -
9748382-9748933,9749805-9749840,9751164-9751218,
9751588-9751697,9751955-9752602
Length = 466
Score = 28.3 bits (60), Expect = 3.8
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Frame = -3
Query: 433 NLXTIRSCWSSTVLAPRGSNAYLSFRILIAPWFTSLFLXPFSYT*KPXAGLASH-VSSLH 257
N T S W + R L +++I+P ++ L +P AG A H + + H
Sbjct: 290 NEETTASGWPRGHVKRRAGANQLGLQLIISPKRSTKLLRAIGDVVQPGAGAADHLIDAFH 349
Query: 256 *VLHDTQVSSANAITKGLG*IHSDVRADIDTNFVSQCSS 140
L + V+ A KG+ R +++T+ + C++
Sbjct: 350 AELFASAVAIKTAKEKGM------ARVELETDSLMLCNA 382
>01_01_0101 - 766382-767487,767599-767756,767900-768615
Length = 659
Score = 27.9 bits (59), Expect = 5.0
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = -1
Query: 252 SCMIPKFPPLMRSPKALARS 193
SC++P++ PL+R P+ A+S
Sbjct: 101 SCLLPRWNPLLRDPRLQAKS 120
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 35 RILSTMLSEAVRLLQEGVDPKELDNMTKQFGFPVGAAT 148
++L+ +L EAV +E DP +L T+Q G V T
Sbjct: 45 QLLNLVLDEAVEFEREQDDPLKLSGKTRQLGLIVCRGT 82
>02_04_0508 - 23550785-23551219,23551717-23552670
Length = 462
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 38 ILSTMLSEAVRLLQEGVDPKELDNMTKQFGFPVG 139
+L+T+L L EGV P ELD MT++ G VG
Sbjct: 414 MLATLLYHFKWELLEGVAPNELD-MTEEIGINVG 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,096
Number of Sequences: 37544
Number of extensions: 307192
Number of successful extensions: 784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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