Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335A12f
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    29   0.49 
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    25   4.5  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   4.5  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   6.0  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   7.9  

>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 240 VNTQASFLRRYTEVFKFCLHLIQSWRHQHYVICIVKVFQDIFAPF 374
           V +  S++      F F +  I SW+H  Y I I+ +F D+ AP+
Sbjct: 86  VTSYFSYMPFAASYFSFTMLYIWSWKHPLYRISILGLF-DVKAPY 129


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 213 YSHVDSFVGVNTQASFLRRYTEVFKF 290
           Y H+  F G++ + +F   Y EV +F
Sbjct: 338 YRHMTEFTGLDLEMAFNEHYHEVMEF 363


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 348 VFQDIFAPFNAPRCCHHFPH 407
           VFQ  F+P +AP   H FPH
Sbjct: 472 VFQGSFSPESAPVNNHAFPH 491


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 266 AEKRGLRINTNKTVDMRVMSKNTTPLKLQDCGFEVSTEVYISGEL 132
           + K+G  +  +K   + V S++T P  L D    V+  + I  E+
Sbjct: 547 SRKKGTALVLDKDKGLAVTSRSTVPYDLGDLTITVADSIQIPAEV 591


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 50  WFQLRESTPGFPNS 91
           W  LRES+P  PNS
Sbjct: 364 WDSLRESSPSIPNS 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,571
Number of Sequences: 5004
Number of extensions: 42232
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)