Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335A12f
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 29 2.6
01_05_0782 - 25148733-25149166,25149252-25149415,25149636-251496... 28 3.4
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502... 28 4.5
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110... 28 4.5
01_06_0759 + 31754616-31754647,31754862-31755077,31755186-317553... 28 4.5
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 27 6.0
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 27 6.0
01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041 27 6.0
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 7.9
01_05_0008 - 17063377-17063813,17064937-17065052,17065284-170657... 27 7.9
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 28.7 bits (61), Expect = 2.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 360 IFAPFNAPRCCHHFPHY 410
+ P NAP+C HH HY
Sbjct: 373 LMLPVNAPKCAHHNNHY 389
>01_05_0782 -
25148733-25149166,25149252-25149415,25149636-25149664,
25150049-25150109,25150264-25150475,25150587-25150742,
25150837-25150986,25151486-25151545,25151653-25151780,
25152399-25152807,25153087-25153106,25153916-25154048
Length = 651
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 281 LQVLLAFDPK---LASSTLCHLHSQGLPRYFRSIQCPEV 388
LQ LLAFDPK A L H + +GL + R C +
Sbjct: 336 LQKLLAFDPKDRPTAEEALAHPYFKGLAKVEREPSCQPI 374
>04_04_0721 -
27549212-27549646,27549739-27549962,27550074-27550227,
27568477-27568821,27568899-27569152,27569257-27569383
Length = 512
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 263 PQIYGGLQVLLAFDPKLASSTLCHLHSQG 349
P I GGL L+ D +AS CH H+QG
Sbjct: 221 PLIGGGLAGLVYDDVFIASYQPCHTHTQG 249
>03_05_0788 +
27709563-27709832,27710101-27710887,27710947-27711086,
27712209-27712442,27712782-27712847
Length = 498
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = -2
Query: 404 REVVTTPRGIEWSENILEDLDYADDIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKT 228
R++ TT G+EW E L D ++ MTP M L DL + +K L+ +T T
Sbjct: 147 RDLSTTMSGLEWVEQKLADRKRCYNMFRMTP---DMFYSLHDLLV--DKYELKSSTKST 200
>01_06_0759 +
31754616-31754647,31754862-31755077,31755186-31755341,
31755446-31755503,31755618-31755935,31756026-31756265,
31756345-31756443,31756529-31756561,31756670-31756867
Length = 449
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 157 VLTSNPQSWSFRGVVFFDITRMS-TVLLVLIRKPLFSADIRRSS 285
VL + PQS++FR I R+S T LL +I++ DI RS+
Sbjct: 400 VLCNKPQSFTFRTTKLSQILRISRTKLLGIIQENREDGDIIRSN 443
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 374 EWSENILEDLDYADDI 327
EWS +ILED+ ADD+
Sbjct: 372 EWSSSILEDIKNADDV 387
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 360 IFAPFNAPRCCHHFPHY 410
+ P NAP+C HH HY
Sbjct: 361 LLLPPNAPKCAHHNNHY 377
>01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041
Length = 609
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +2
Query: 290 LLAFDPKLASSTLCHLHSQGLPRYFRSIQCPEVLSPLPALCHPV 421
L + + ++A + +C+L G+ Y + E L L HPV
Sbjct: 367 LYSLEQRIARNLICYLEKSGMRNYIFLVDNTEFLDDLAHRGHPV 410
>10_08_1023 - 22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 37 LTPRLVSTARKHPWLS*FVSLYLRPNHPDLIWSS 138
LTP+L R HP +L P++IW+S
Sbjct: 1889 LTPKLADMLRNHPPKELLSNLNANLESPEIIWNS 1922
>01_05_0008 -
17063377-17063813,17064937-17065052,17065284-17065728,
17066421-17066760
Length = 445
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -3
Query: 187 SSKTVGLKSAQRFTYLGSSISNQGGSDEDIEIRIRKARGAF 65
S++ G S+ Y G+S + G D+D E +IRKA AF
Sbjct: 7 SARAAGASSSSS-PYAGASSATSVGDDDD-ESKIRKANPAF 45
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,595,091
Number of Sequences: 37544
Number of extensions: 285999
Number of successful extensions: 629
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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