Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS335A12f
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.      32   0.19 
AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.      32   0.19 
AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1 suppres...    32   0.19 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    32   0.19 
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    32   0.25 
AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical ...    32   0.25 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    31   0.44 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    31   0.44 
L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical p...    30   1.0  
Z81036-3|CAB02741.1|  357|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr...    28   4.1  

>AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 305 DQMQAKLEDLRISAEKRGLRINTNKTVDMRVMSKN-TTPLKLQDCGFEVSTEVYIS 141
           ++M + L+D  +  E+ G     + T+D  V S N   P   +DCGF   T  ++S
Sbjct: 528 ERMHSVLDDRSLHCEECGRGFQQHSTLDHHVASHNDPRPYICEDCGFATKTADHLS 583


>AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 305 DQMQAKLEDLRISAEKRGLRINTNKTVDMRVMSKN-TTPLKLQDCGFEVSTEVYIS 141
           ++M + L+D  +  E+ G     + T+D  V S N   P   +DCGF   T  ++S
Sbjct: 528 ERMHSVLDDRSLHCEECGRGFQQHSTLDHHVASHNDPRPYICEDCGFATKTADHLS 583


>AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1
           suppressor/dio uptake defective/raf enhancer protein 1
           protein.
          Length = 909

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 305 DQMQAKLEDLRISAEKRGLRINTNKTVDMRVMSKN-TTPLKLQDCGFEVSTEVYIS 141
           ++M + L+D  +  E+ G     + T+D  V S N   P   +DCGF   T  ++S
Sbjct: 528 ERMHSVLDDRSLHCEECGRGFQQHSTLDHHVASHNDPRPYICEDCGFATKTADHLS 583


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -2

Query: 401 EVVTTPRGIEWSENILEDLDYADDIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKTVD 222
           E   T  G+  +   L +L +ADDIVL+    +     L++L     + GL INT KT  
Sbjct: 131 EDYNTIPGMRVNGKNLTNLRFADDIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKV 190

Query: 221 MR 216
           +R
Sbjct: 191 LR 192


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 356 LEDLDYADDIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKTVDMR 216
           L +L +ADDIVL+    +     L++L     + GL INT KT  +R
Sbjct: 624 LTNLRFADDIVLIANHPNTASKMLQELVQKCSEVGLEINTGKTKVLR 670


>AF016663-5|AAC70880.1|  864|Caenorhabditis elegans Hypothetical
           protein F21E9.5 protein.
          Length = 864

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 20/55 (36%), Positives = 27/55 (49%)
 Frame = -2

Query: 380 GIEWSENILEDLDYADDIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKTVDMR 216
           GI  +   L +L +ADDIVL+          L +L       GL+INT KT  +R
Sbjct: 559 GIRVNGQNLTNLRFADDIVLVAHNPRTASQMLTELVEKCSSVGLKINTGKTKVLR 613


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 356 LEDLDYADDIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKTVDMR 216
           L +L +ADDIVL+    +     L++L     + GL INT KT  +R
Sbjct: 795 LTNLRFADDIVLIANHPNIASKMLQELVQKCSEVGLEINTGKTKVLR 841


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -2

Query: 356 LEDLDYADDIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKTVDMR 216
           L +L +ADDIVL+    +     L++L     + GL INT KT  +R
Sbjct: 534 LTNLRFADDIVLIANHPNIASKMLQELVQKCSEVGLEINTGKTKVLR 580


>L07144-12|AAM54162.1| 1053|Caenorhabditis elegans Hypothetical
            protein R05D3.1 protein.
          Length = 1053

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = -2

Query: 305  DQMQAKLEDLRISAEKRGLRINTNKTVDMRVMSKNTTPLKLQDCGFEV 162
            ++ +AKL  + +  +   + + TN T+++R M +N    KLQ+ GF V
Sbjct: 934  EECEAKL--IYVENQLNFIEMVTNGTIEIRSMGRNQLEEKLQEMGFRV 979


>Z81036-3|CAB02741.1|  357|Caenorhabditis elegans Hypothetical
           protein C16C2.4 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -2

Query: 401 EVVTTPRGIEWSENILEDLDYADDIVLMTPTLDQ--MQAKLEDLRISAE 261
           E+  T    EW   IL DL+  DD+V  T   D    +A+++DL ++AE
Sbjct: 310 ELTLTSVDEEWEREILNDLNDYDDVVEKTGGKDDDAWEAEIQDL-LNAE 357


>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
            D2085.1 protein.
          Length = 2198

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = -2

Query: 368  SENILEDLDYADDIVLMTPTLDQMQAKLEDLRISAEKRGLRINTNKTVDMRVMSKNTTPL 189
            SE+I     ++ D  L+TP  D  +  L+ ++    +     N     +M++++KN   L
Sbjct: 1154 SEHIENAGVHSGDATLVTPAQDMNKLTLDRIKDITFRIAEAFNVTGPFNMQLIAKN-NEL 1212

Query: 188  KLQDCGFEVS 159
            K+ +C   VS
Sbjct: 1213 KVIECNLRVS 1222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,215,102
Number of Sequences: 27780
Number of extensions: 239972
Number of successful extensions: 569
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)