Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS335A08f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 235 3e-63
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 39 4e-04
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 33 0.026
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 31 0.14
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 27 1.3
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 1.7
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 1.7
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 3.0
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 25 5.2
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 5.2
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p... 25 6.8
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 25 9.0
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom... 25 9.0
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.0
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 235 bits (575), Expect = 3e-63
Identities = 114/175 (65%), Positives = 131/175 (74%), Gaps = 2/175 (1%)
Frame = +1
Query: 1 KPYNFDALGQPPECGHLHPLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDALFQPQQ 180
K YNF A G PP G LHPL+KVR EFR+ F E+GF EMPTN ++ES FWNFDALF PQQ
Sbjct: 207 KSYNFAAEGIPPAGGCLHPLMKVREEFRKFFFELGFEEMPTNNFVESGFWNFDALFVPQQ 266
Query: 181 HPARDAHDTFFMSSPAATTEFP-MEYLERVKKVHSKGGYGSQ-GYRYDWKIEEAQKNLLR 354
H ARDA DTFF+ PA+T + P EY+ RVK H GG GYR + +EE +K +LR
Sbjct: 267 HSARDAQDTFFLKVPASTDKLPDPEYVARVKATHENGGETKGIGYRAPFSLEETRKLVLR 326
Query: 355 THTTAVSARMLYRLAQQPEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVVADR 519
THTTAVSA MLY+LAQ F P KYFSID+VFRNET+DATHLAEFHQVEGV+ DR
Sbjct: 327 THTTAVSANMLYKLAQN-GFHPAKYFSIDRVFRNETVDATHLAEFHQVEGVICDR 380
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 39.1 bits (87), Expect = 4e-04
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 340 KNLLRTHTTAVSARMLYRLAQQPEFTPQKYFSIDKVFRNETLDATHLAEFHQVEGVV 510
K LRTHT+A RLA++ F + V+R + +D++H FHQ+EG +
Sbjct: 107 KTCLRTHTSAHQPEEFSRLAKEG-FKKNGFLITADVYRRDEVDSSHYPIFHQMEGAL 162
Score = 35.1 bits (77), Expect = 0.006
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Frame = +1
Query: 52 HPLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDALFQPQQHPARDAHDTFFMSSPA- 228
HP+ +R + F + + I S NFD+L P+ H +R DT++M++
Sbjct: 50 HPICSLRQLLEQQFQKFEMNNVQKESPIVSVETNFDSLGFPKTHVSRSKSDTYYMNNKTC 109
Query: 229 ----ATTEFPMEYLERVKKVHSKGGY 294
+ P E+ K+ K G+
Sbjct: 110 LRTHTSAHQPEEFSRLAKEGFKKNGF 135
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 33.1 bits (72), Expect = 0.026
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 46 HLHPLLKVRSEFREIFLEMGFTEMPTNKYIESSFWNFDALFQPQQH 183
H+ PL ++RSE E + FT P + + + N D +F PQ H
Sbjct: 47 HMFPLARIRSELSEQDSSISFTHDPLHIPLPNPSNNNDNIFHPQVH 92
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 30.7 bits (66), Expect = 0.14
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 424 KYFSIDKVFRNETLDATHLAEFHQVEGVVA 513
+ F + K FRNE +DATH EF E A
Sbjct: 273 RVFELGKNFRNEGIDATHNPEFTSCEAYCA 302
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 349 LRTHTTAVSARMLYRLAQQPEFTPQKYFSIDKVFRNETLDATHLAE 486
LR +T++ + LYR+ + +F P+ +F + + F +A L E
Sbjct: 561 LRVSSTSL-LQQLYRINSRKQFLPEDFFLMSEYFNLNEFEANALQE 605
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 27.1 bits (57), Expect = 1.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 424 KYFSIDKVFRNETLDATHLAEFHQVE 501
+ + I + FRNE D TH EF +E
Sbjct: 318 RVYEIGRQFRNEGADLTHNPEFTSIE 343
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 174 STAPSQGCSRHILYVLACCHHGVPHGIPGEGEEGAQQRWIWLPGLQIRL 320
ST PS C R I Y+ P + GEE Q + + LQ++L
Sbjct: 175 STTPSIFCVRIIDYLSKMTSQAAPASLTFNGEEAISQWYFFHFNLQLQL 223
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 181 HPARDAHDTFFMSSPAATTEFPMEYLERVKKVHSKGGYGSQGYRYDWKIEE 333
HP+ + D + ++ + P + V +V G SQG RY W E
Sbjct: 206 HPSTEYSD--YETAELLDSSLPYAIISSVNEVCKDDGEKSQGRRYPWGTSE 254
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 162 TVP-TSTAPSQGCSRHILYVLACCH 233
T+P TS + SQ CS ++Y L C+
Sbjct: 313 TLPSTSASISQPCSEGVIYALKACY 337
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 175 QQHPARDAHDTFFMSSPAATTEFPMEYLERVKKVHSK 285
Q+HP H + F SS + +F + R ++HS+
Sbjct: 228 QEHPKPSFHPSQFESSFSPRVQFDHDVERRASELHSR 264
>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 148 WNFDALFQPQQHPARDAHDTFFMS 219
WNF + P HPA D H F +S
Sbjct: 65 WNFFST-HPSVHPANDEHAAFQIS 87
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Frame = +1
Query: 124 NKYIESSFWNFDALFQPQ----QHPARDA---HDTFFMSSPAATTEFPMEYLE 261
N Y+ SS + D++F P+ + H T SS A+ ++F M+YL+
Sbjct: 23 NSYLASSLMSHDSIFDGPGLGTSIPSSVSSFHHQTLRPSSDASVSQFSMDYLQ 75
>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 260
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Frame = +1
Query: 115 MPTNKYIESSF----WNFDALFQPQQHPARDAHD 204
MP N+YIE S FD + ++ AR+AHD
Sbjct: 1 MPQNEYIEESIRKHGRRFDHEERKRKKAAREAHD 34
>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 220
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 271 KVHSKGGYGSQGYRYDWKIEEAQKNLL 351
K+H +G +G+ +WKIEE + ++
Sbjct: 182 KIHREGLKAVRGWYKNWKIEEYELEVI 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,183,698
Number of Sequences: 5004
Number of extensions: 44314
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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